Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[refseq_20GCF_5F000002515.2_202004-07-02] 7 sequences; 10,729,447 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 seq1 87.8 1e-12 seq5 86.0 5e-12 >seq4 Length=1715506 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 1545579 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 1545520 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 1545519 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 1545460 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | ||| ||||| | ||| ||| | ||| ||| | || Sbjct 1545459 ATCTTAGACTTAACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATGGTCTTA 1545400 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || ||||||||||| Sbjct 1545399 CCTGTTAAGGTTTTGACGAAAATTTGCAT 1545371 >seq1 Length=1062590 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||| | || ||| ||| ||||||| Sbjct 59927 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCC 59868 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || | Sbjct 59867 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGA 59808 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||| | ||| ||| | |||||| | || Sbjct 59807 ATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTA 59748 Query 18297 CCGGTCAATGTTTTTACAAAA 18317 || ||||| || || || ||| Sbjct 59747 CCAGTCAAGGTCTTGACGAAA 59727 >seq5 Length=2234072 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||||||||| || || || Sbjct 75441 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75500 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | ||||||||| || || | ||||| || || ||| | |||| Sbjct 75501 GCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATCTTAGACTTG 75560 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | ||||| | ||| ||| | |||||| | || ||||| || ||| Sbjct 75561 ACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTACCGGTTAAGGTT 75620 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 75621 TTGACGAAAATTTGCAT 75637 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||||||||| || || || Sbjct 75669 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75728 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | ||||||||| || || | ||||| || || ||| | |||| Sbjct 75729 GCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATCTTAGACTTG 75788 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | ||||| | ||| ||| | |||||| | || || ||||| ||| Sbjct 75789 ACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTACCAGTCAAGGTT 75848 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 75849 TTGACGAAAATTTGCAT 75865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343967637215