Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[refseq_20GCF_5F000002515.2_202004-07-02] 7 sequences; 10,729,447 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq4 123 2e-23 seq1 104 2e-17 >seq5 Length=2234072 Score = 143 bits (158), Expect = 2e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||||| || ||||| |||||||| || |||||| | |||| | | Sbjct 75423 CTCAAAACAAGATGCAAAGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTGCCA 75482 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || ||||| | || |||| ||| ||||| || || || |||||||| Sbjct 75483 TCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTG 75542 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | |||||||||||| |||||||| | ||| | Sbjct 75543 TCTTGAATCTTAGACTTGA-CGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGAT 75601 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||||| || ||||||||||| Sbjct 75602 GGTCTTACCGGTTAAGGTTTTGACGAAAATTTGCAT 75637 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||| | || |||||||||||||| ||||| || | |||| | | Sbjct 75195 CTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCA 75254 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || ||||| | || |||| ||| ||||| || || || |||||||| Sbjct 75255 TCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTG 75314 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | |||||||||||| |||||||| | ||| | Sbjct 75315 TCTTGAATCTTAGACTTGA-CGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGAT 75373 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||||| || ||||||||||| Sbjct 75374 GGTCTTACCGGTTAAGGTTTTGACGAAAATTTGCAT 75409 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||| | || |||||||||||||| ||||| || | |||| | | Sbjct 74967 CTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCA 75026 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || ||||| | || |||| ||| ||||| || ||||| |||||||| Sbjct 75027 TCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGAATACCTTCTTTG 75086 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | |||||||||||| |||||||| | ||| | Sbjct 75087 TCTTGAATCTTAGACTTGA-CGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGAT 75145 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| || ||||||||||| Sbjct 75146 GGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 75181 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||||| || ||||| |||||||| || |||||| | |||| | | Sbjct 75651 CTCAAAACAAGATGCAAAGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTGCCA 75710 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || ||||| | || |||| ||| ||||| || || || |||||||| Sbjct 75711 TCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTG 75770 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | |||||||||||| |||||||| | ||| | Sbjct 75771 TCTTGAATCTTAGACTTGA-CGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGAT 75829 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| || ||||||||||| Sbjct 75830 GGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 75865 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||| | || |||||||||||||| ||||| || | |||| | | Sbjct 75879 CTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCA 75938 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || ||||| | || |||| ||| ||||| || || || |||||||| Sbjct 75939 TCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTG 75998 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || ||| | || | || | |||||| ||||| || ||||| | ||| | Sbjct 75999 TCTTGAATCTTCGATTTCA-CGTTATCGATGGTGTCAGAAGATTCAACTTCCAAAGTGAT 76057 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| || || ||||||||||| Sbjct 76058 AGTCTTACCAGTTAAAGTCTTAACGAAAATTTGCAT 76093 >seq4 Length=1715506 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || ||| | ||| || | Sbjct 1545585 CTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCA 1545526 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || ||||| ||||| || Sbjct 1545525 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTG 1545466 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || || | || | |||||||||||| |||||||| | |||| Sbjct 1545465 TCTTGGATCTTAGACTTAACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATG 1545406 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || || || |||| ||||| || ||||||||||| || Sbjct 1545405 GTCTTACCTGTTAAGGTTTTGACGAAAATTTGCATGGC 1545368 >seq1 Length=1062590 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || || | |||| || | Sbjct 59933 CTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCA 59874 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 59873 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTG 59814 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | |||||||||||| |||||||| | ||| | Sbjct 59813 TCTTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAAGTGATG 59754 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAA 45332 || || || || | || || || ||| Sbjct 59753 GTCTTACCAGTCAAGGTCTTGACGAAA 59727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003160449720