Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[refseq_20GCF_5F000002515.2_202004-07-02] 7 sequences; 10,729,447 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 242 4e-59 seq3 179 4e-40 >seq6 Length=2602197 Score = 242 bits (268), Expect = 4e-59 Identities = 592/884 (67%), Gaps = 15/884 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || |||| ||||| ||||| || || || || || || | || || ||| | Sbjct 1394853 TTTTGGTAATCGGAGACTCTCTTTTCGAAAAAGTTGGTCTTACCAGCCAAGGAGATATTT 1394794 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||| ||||| || | ||||| | |||||| || | || || | | | Sbjct 1394793 TCCATGAAATCGAATGGGTTGGTGACATTGAAATATTTCTTGTTACCC-AAGGCGACCAA 1394735 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||| || || ||||||| | ||| |||||| | || ||||| || | || Sbjct 1394734 TAATCTGTCGGCGACAAATTCCACGTATTGGTTCATTAAGTCTGCGTTCATACCCAATAG 1394675 Query 18849 TTTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 ||| ||||| ||||| | ||| | |||| ||| || | || || |||| || | Sbjct 1394674 AGAAACGGGTAGAGCATCCATGAAGTATCTCTT-TTCAATTTCGACAGCTTCTGTAATGA 1394616 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | | || | ||| ||| || | | ||| ||| | | ||| |||| Sbjct 1394615 TCTTTTCCACAATTTCTGGATTTGGTTTATTCTTCAAATGGGCAAAGAGTAGACAGGCAA 1394556 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || |||||| || || ||||||| ||||| || ||||| || || |||||||||| Sbjct 1394555 AGTCTGTATGTAGACCTTCATCTCTACAGATCAACTCGTTAGAGAAAGTCAAACCAGGCA 1394496 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | | || | || || |||||||| |||| |||||| || || || ||||| | ||||| Sbjct 1394495 TTAACCCCTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCGGAGAAGAACACACCTT 1394436 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | || || || |||||||| | |||||| ||| ||| | ||||||| || ||||||||| Sbjct 1394435 CCACAGCAGCGAAAGCAACCAATCTTTCACCA-AACAAGGCATCATCATCTTGAATCCAT 1394377 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| |||||||| | ||| | ||| || || || |||| ||| || | | Sbjct 1394376 CTGATAGCCCATTCAGCCTTTTCTTTAATTTGTGGGATAGTTTCGATAGCATTGAACAAA 1394317 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || || || | || ||| |||| ||| | ||| ||||| || || | |||||| Sbjct 1394316 AACTCACTTTCCTTTGGATCCTTAATATAGGTATCAATCAACAAGGAATAAGTCTCTGAA 1394257 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || ||||| || || || || || || || |||||| | ||||||| | || ||| Sbjct 1394256 TGGATATTCTCCATCATAATTTGGAACCCATAGAAACATTTCGCTTCTGGTGCTTGCACT 1394197 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 ||| | || | || ||||| ||||| ||||| || ||||| || || || || Sbjct 1394196 TCAGCTGAGAAGTTCTCCACCAAGTTTTCGTTAACGATACCATCCGAGGCAGCGAAGAAC 1394137 Query 19387 GCTAATACATGTTTA-ATAAAATGTTTTTC-ATCTGAGGTTAAT----GTATTCCAATCA 19440 || || | | | | |||||| |||| ||| | || || | |||||||| Sbjct 1394136 GCCAA-AATTCTAGAGATAAAAAACCTTTCGTTCTCA--TTCATTCTGTTGTTCCAATCG 1394080 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | | ||| || || ||||| | |||||| | ||||| ||||| || || || | ||| Sbjct 1394079 TGCAAATCCTTGGACAAATCGATTTCTTCTGCAGTCCAGAAAGACGCTTCGGCCCTCTTA 1394020 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || | ||| || ||| | || | || || || | |||||| Sbjct 1394019 TATGCTTCCCAAATCTCATGGTACTTGATTGGGAAGAGAACAAA 1393976 Score = 208 bits (230), Expect = 9e-49 Identities = 413/600 (69%), Gaps = 11/600 (2%) Strand=Plus/Minus Query 47875 TAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTA 47934 |||| || | ||||||||||||||| ||||| ||||| | |||| | || | | | Sbjct 110551 TAAG-GCAACAGATGCTAGATTACAGACAGCAACCTCTTCTGGAGAGCTGTACTCGACAA 110493 Query 47935 TTTCAGCA-CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||| ||| || |||||| |||||||| || | ||||| |||||| || Sbjct 110492 TTTC-GCAGCAAAGATTAGATGATTTGATAACGCCGAGATTTTTCTGATTAGATTTTTTA 110434 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||||||| || || || ||||| || || |||||| || | ||| || || || Sbjct 110433 TTACATGCATCTTTATAGAGCATGAACGGCACTCCAGTCTCCGTTTGACTTTGAAGTATC 110374 Query 48054 GATTTCCAAACAGTCCTAGC-CTTT-ATAACAGCTCTAGCT-TTATTATCATGTTCGTAT 48110 | ||||| | | || |||| || |||| ||| | || | |||||| Sbjct 110373 TCTGACCAAAT--TTGTTGCGCTTTCATTTTTTTCCTAGGAATTAGT-TCTTTCTCGTAT 110317 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170 | ||| | ||| ||||||||||| ||||| || | || |||||| ||||| Sbjct 110316 CTTTCATAAAGCTTATCAAATTCATCACCATAACAATCAGTTAGCCCAGGTGCTTCATCT 110257 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || | | | |||||| || |||| ||| | || | ||||||| | ||| |||||| Sbjct 110256 GGGGAAAAAATTGACCAGTCTTCATTATTCTCAACCCGCTTCATAAAGAGATCAGGTATC 110197 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || || || ||| ||||| || | || | ||| || |||||| |||| || | ||| Sbjct 110196 CAGAGGGCATAAAACAAATCTCTTGCCCTCATTTCCTCTTTGCCATGATTCTTTCTCAGT 110137 Query 48291 T-CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 | |||||| ||| ||||| || |||||||| || || |||||||| | | | ||||| Sbjct 110136 TGCAAGAA-GTCAATTATGTCTGCATGCCAGGGCTCCAAATATATACAGAATGCTCCTGG 110078 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || |||||| || |||||||| | ||| |||||||| || || |||| ||||||||||| Sbjct 110077 TCTTTTATTTCCACCTTGATCAACATACCTGGCAGTGTTATTGAAAACCCTTAACATTGG 110018 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 |||| ||||| ||| | || |||| || || ||||| |||| | || | ||||| Sbjct 110017 CACAAGGCCATTGGATGTTCCGTTGGAACCTGAGATATATGCTCCATTTGCACGGATATT 109958 >seq3 Length=1753957 Score = 179 bits (198), Expect = 4e-40 Identities = 538/820 (66%), Gaps = 18/820 (2%) Strand=Plus/Plus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 |||||| || |||||||||||||| || || || || |||||| | || | ||| | ||| Sbjct 694829 GTTACAAGCATCCTTGTAAAGCATGAACGGAGTACCTGTTTCTGTTTGCGCTTCCAAGAT 694888 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCT---CTAGCTTTATTATCATGTTCGTA 48109 || | ||| | | ||||| ||| | | ||| | | || |||||| Sbjct 694889 AGCATACCATAATTTTTGGGCCTT---AACGGTTTTTCTACCACGACCTTCTCTTTCGTA 694945 Query 48110 TTTAGTATATA-ACTTCT-CAAATTCATCCCCATACACATTATCTAACCCAGGACATTCA 48167 || ||| | |||| ||||||| || || || | | | ||| || ||| |||| Sbjct 694946 AC--GTTCATACATTTCTTCAAATTCTTCACCGTAAGCGTCAGGTAAACCGGGAGCTTCA 695003 Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227 |||||| | | ||| | ||| |||| | |||| ||||| |||| || | ||| || Sbjct 695004 TTAGGAGAGAACAAGGTCCAGTCCTGGTTCTTTTCCACTCTCTTCATGAACAAATCAGGA 695063 Query 48228 ATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA 48287 ||||| | || |||||||| |||| | | |||||| || ||| |||| | | Sbjct 695064 ATCCACAATGCAGGGAATAAATCTCTAGCACGAATTTCTTCCTTTCCATGATTCTTCCTG 695123 Query 48288 AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCT 48347 | |||| || || | ||||||| |||||||||||| | |||| || | ||||| Sbjct 695124 ATATCAATGAAATCGAAGATATCAGAATGCCATGGTTCAATGTATAAAGCGAAGGCACCT 695183 Query 48348 GGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATT 48407 |||| || ||||| ||||| || | || | ||||| ||||| | || | | |||| Sbjct 695184 GGTCTCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACACGGATCATT 695243 Query 48408 GGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 || | |||||||| || | || ||||| || | ||| ||| ||| ||| | || Sbjct 695244 GGAATGATACCATTAGAAGTTCCGTTGGTACCAGCAATGTAAGAACCAGTAGAACGGATG 695303 Query 48468 TTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 || ||| || || || |||||||| || | || || || | |||||| || | Sbjct 695304 TTGTGAATGTGCAA-CCCAATACCACCAGCAGTCTTTGAGATCATAGCACATTCCTTCAA 695362 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 |||||| ||||| ||||| || ||| ||| ||||| | | |||||| ||||| Sbjct 695363 GGTATCGTAAATACCTTCGATGGAATCCTCTTTCATAGCAACCAAGAAACAAGATGACAT 695422 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 ||| |||||| ||| || | || || ||||| ||||| || || | || || ||| Sbjct 695423 TTGAGGATGAGGAGTACCAGCGTTGAACAATGTAGGAGAAGCGTGGGTGAA--ATATCTT 695480 Query 48647 TGATAACAAT---TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 ||| ||| | || || || || | || |||||||| || ||||| | Sbjct 695481 TGA-GACATTAGGTTGTAAGTCTCTAATACTCGTTCTATATCGTTACCGTGAATACCAAC 695539 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 || || | ||| | ||| | ||| || | |||| ||| || || ||| |||| | Sbjct 695540 AGCCACTCTCATAATCATGTGTTGTGGACGTTCAGCAACCTTACCATCGATTCTCAACAA 695599 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||| || || || ||||| || || ||| || Sbjct 695600 GTAAGAACGTTCTAAGGTCTTGAAACCGAAGTAATTGAAT 695639 Score = 89.7 bits (98), Expect = 6e-13 Identities = 307/474 (65%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || | |||||| | ||||| | | || | || ||||| || || ||||||||| Sbjct 693789 TTATCGATAGTAAATTGAATTGCAGCAGATGCAGCTTGTGTTCTTAGGTAGTACATACCA 693848 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||| ||||| ||||||| ||||||||||| |||||| ||| | ||| Sbjct 693849 GTCTTCAAACCCTTTTTCCATCCGTAGAAATGCATGGAAGTTAACTTACCCATGGTTGGT 693908 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 | |||||| ||||| | |||||| |||||||| | ||| | | || || ||| Sbjct 693909 GCACGAATATGGATATTTAAGGATTGAGATTGATCAATGTAAGCAGCACGGTCGGCCGCC 693968 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || || | |||| | |||| | | ||||| || || || || | | || | ||| Sbjct 693969 ATGTCGATAATATGCTTTTGAGACAATTCCCAAACAGTCTTGTATAGGTCCTTCAATTCT 694028 Query 47214 TCTGGGAGA-TTAGTA--TTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | ||||| | || ||| || ||||| || || || | |||| | || ||| || Sbjct 694029 TGTGGGATATTTGGTAAGTTCTGAATGGAACCATTGTCGGCAATAA-TATGAGATTTCAT 694087 Query 47271 tcatttgaccaaagttttc-gttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || || || | | ||| || | || | | || || |||||||| Sbjct 694088 AGCTTCATCCCAAATACCCAAGTCAACCAAGTCATGCAATAAGTATGGGTTGACAATTTG 694147 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 || || ||||| | || | ||| || || || ||| |||||||| | | |||| Sbjct 694148 GAACTCACCAGACAAAACACGACGAGAGTACATGTTGGATGTGTATGGTTCAAAACATTC 694207 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 || | || |||||||||| || |||||||| ||||| | ||||| || || Sbjct 694208 GTTGTAACCCAAAATTTGAGATGTGGATGCTGTTGGCATTGGAGCAACCAACAA 694261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108750815480