Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[refseq_20GCF_5F000002515.2_202004-07-02] 7 sequences; 10,729,447 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 118 8e-22 seq5 116 3e-21 seq4 116 3e-21 >seq1 Length=1062590 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || | |||||||| ||||| ||||| || || | Sbjct 59945 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 59886 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | ||| || | ||| || |||||| | ||||||||||| || || || || Sbjct 59885 AAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 59826 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | |||||| | || | ||||| ||| ||| || Sbjct 59825 ATACCTTCCTTGTCTTG-AATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGAC 59767 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 ||| | ||| || || || ||||| ||||| || || || Sbjct 59766 TTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTGACGAA 59728 >seq5 Length=2234072 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||| ||||| |||||||| || | | ||| | ||| || | || || || Sbjct 75897 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75956 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| || || || || ||||| ||||||||||| ||| || | ||| Sbjct 75957 GCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG-AATCTTCGATTT 76015 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 || | || | ||||||||| ||| ||||| | ||| ||||| || |||||||| || Sbjct 76016 CACGTTATCGATGGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAAGT 76075 Query 29769 TTTAACAAATATCTGCATTTT 29789 ||||| || || ||||| || Sbjct 76076 CTTAACGAAAATTTGCATGTT 76096 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||| ||||| |||||||| || | | ||| | ||| || | || || || Sbjct 74985 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75044 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| || || || |||||||| ||||||||||| ||| || | || Sbjct 75045 GCAAAAATTAATCTTTGTTGGTCTGGAGGAATACCTTCTTTGTCTTG-AATCTTAGACTT 75103 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | ||||| ||| ||| ||||| | ||| || || || ||||| ||||| Sbjct 75104 GACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTACCAGTCAAGGT 75163 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || || ||||| Sbjct 75164 TTTGACGAAAATTTGCAT 75181 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||||||||| ||||| ||||| | | ||| | ||| || | || || || Sbjct 75441 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75500 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| || || || || ||||| ||||||||||| ||| || | || Sbjct 75501 GCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG-AATCTTAGACTT 75559 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | ||||| ||| ||| ||||| | ||| || || || || |||||||| Sbjct 75560 GACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTACCGGTTAAGGT 75619 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || || ||||| Sbjct 75620 TTTGACGAAAATTTGCAT 75637 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||||||||| ||||| ||||| | | ||| | ||| || | || || || Sbjct 75669 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75728 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| || || || || ||||| ||||||||||| ||| || | || Sbjct 75729 GCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG-AATCTTAGACTT 75787 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | ||||| ||| ||| ||||| | ||| || || || ||||| ||||| Sbjct 75788 GACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTACCAGTCAAGGT 75847 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || || ||||| Sbjct 75848 TTTGACGAAAATTTGCAT 75865 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||| ||||| |||||||| || | | ||| | ||| || | || || || Sbjct 75213 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCATCTTCCAACTGCTTACCT 75272 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| || || || || ||||| ||||||||||| ||| || | || Sbjct 75273 GCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG-AATCTTAGACTT 75331 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | ||||| ||| ||| ||||| | ||| || || || || |||||||| Sbjct 75332 GACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTACCGGTTAAGGT 75391 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || || ||||| Sbjct 75392 TTTGACGAAAATTTGCAT 75409 >seq4 Length=1715506 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || | |||||||| ||||| ||||| || || | Sbjct 1545597 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 1545538 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | ||| || |||||| | ||||||||||| || || || ||| Sbjct 1545537 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGA 1545478 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | || || ||| | || | ||||| ||| ||| ||| Sbjct 1545477 ATACCTTCCTTGTCTTGGATCTTAGACTTAACATTGTCAATGGTGTCGGAAGATTCGACT 1545418 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || ||||||||||| || || || ||||| Sbjct 1545417 TCCAAGGTAATGGTCTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 1545371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219167135987