Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[refseq_20GCF_5F000002515.2_202004-07-02] 7 sequences; 10,729,447 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq3 93.3 3e-14 seq2 84.2 2e-11 >seq1 Length=1062590 Score = 105 bits (116), Expect = 5e-18 Identities = 387/604 (64%), Gaps = 28/604 (5%) Strand=Plus/Plus Query 40677 AATTTGAGAAATCAG---TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATT 40733 |||||||| ||| | || ||| | || ||||| || | | ||||| |||||| ||| Sbjct 698794 AATTTGAGCAATGATACTTTCCCGCTTCTCACTACGAAGAGAGTGTTTACGAAAGGTATT 698853 Query 40734 GCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGA 40793 || || ||||||||| | || ||||| | | ||||||||||||||| | Sbjct 698854 ATTTTGGAGCTCTTATGGTTTGTTGCTGGATGTACAGACGGGAAGAAATTATCAGAACAA 698913 Query 40794 GGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGT-CTAGCATAGGATTACA 40852 || || | || ||| | | || ||||| || || || | | || | || Sbjct 698914 GGCGTTAAGATATGGGAAGGTAACGGTTCTCGTGAGTACCTGGACTCACTTGGGTTGACT 698973 Query 40853 AGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGC 40912 || || || || ||| | || || ||||| || || || | | |||||||||| || Sbjct 698974 -GACAGAAGAGAGGGGGATTTAGGACCAGTTTACGGGTTCCAATGGAGACATTTTGGGGC 699032 Query 40913 AAAATATGACACTATGTACTC-TGATTATACCAATAAAGGAATGGATCAATTACAGTGCG 40971 ||||| | || |||| | |||||||| | |||| | ||||| || || Sbjct 699033 CGAATATAAGAC-ATGTGATGATGATTATAGTGGTCAAGGTGTTGATCAGTTGAAGGAGA 699091 Query 40972 TTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACC 41031 |||| ||| | | || | |||| | | || | ||||| | | || ||||||| Sbjct 699092 TTATTCATAAGTTGAAGACAAATCCATACGACAGAAGAATAATTCTTTCTGCATGGAACC 699151 Query 41032 CAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT 41091 | |||| | | |||||| || || || || ||| | || | || |||||||| Sbjct 699152 CTCCGGATTTCCCCAAGATGGCTTTACCGCCATGCCATGTTTTCTCGCAATTTTACGTCA 699211 Query 41092 G------CAATGGTGAAC---------------TGTCATGTCAATTGTATCAAAGATCAG 41130 | ||| || ||| |||||||| | | ||||| |||||| Sbjct 699212 GTTTCCCCAAGGGAGAAGGTGCCAAACCAAGATTGTCATGTGTACTTTATCAGAGATCAT 699271 Query 41131 GTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGA 41190 |||| ||||| ||||| || || |||||||| ||| ||||| || || ||| | |||| Sbjct 699272 GTGATATGGGTCTAGGAGTACCCTTTAACATCGCGTCGTATGCGCTACTGACGAAGATGA 699331 Query 41191 TTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATA 41250 |||| || || | |||||||||||||| ||||||| || || |||| ||| Sbjct 699332 TTGCTATGGTCTGTGATATGGAACCTGGTGAATTTATTCACACTTTGGGTGATGCGCATG 699391 Query 41251 TTTA 41254 |||| Sbjct 699392 TTTA 699395 >seq3 Length=1753957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 238/359 (66%), Gaps = 10/359 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || || |||||||||||||| | ||| || || || || || || || Sbjct 1270875 CCCAAGATCGTGAACGGTCCTGAAATCTTGAGTAAGTACGTTGGATCTTCAGAGGAGAAC 1270816 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || | || ||||| |||| ||| | || | |||| | || ||| || Sbjct 1270815 ATCCGGAACCTATTCAAAGACGCGGAAGCTGAATACAAG-GCAAAGGGAG-AAGAGTCCT 1270758 Query 19549 --TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC----- 19601 || || || || || | ||||| ||||| | | | || |||||||| || Sbjct 1270757 CGTTACATATAATCATTTTCGATGAGTTGGATTCTGTTTTCAAACAAAGAGGCTCAAGAG 1270698 Query 19602 -TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTG 19660 || || || ||| || ||| | ||||||||| ||| | || | || | || |||| Sbjct 1270697 GTGATGGAACTGGCGTCGGTGATAATGTTGTCAACCAATTACTTGCCAAGATGGATGGTG 1270638 Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720 | | ||| |||| ||||| ||||||||||| ||||| ||| | || || || || | Sbjct 1270637 TCGATCAATTGAACAATATCTTAGTTATTGGTATGACCAATCGTAAAGATTTGATTGATA 1270578 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 ||| ||| |||| || ||| | || ||| || | | |||||| | ||||| || ||| Sbjct 1270577 ACGCTTTACTACGTCCTGGTAGATTCGAAGTACAAGTTGAAATTCAATTACCGGACGAA 1270519 >seq2 Length=1320834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 115034 GGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCGGC 115093 ||||||||| || |||| ||||| ||||| || || ||||| || || | || || || Sbjct 502299 GGTCATACGAGATGGAATGGCATGAGGATTGATTATTAAGTCCGGTACAACACCTTCAGC 502358 Query 115094 TGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGGTAA 115152 |||||| ||||| || | ||| || || | || ||| ||| || |||||| || | Sbjct 502359 TGTGAATGGCATATCTT-CTGTGCGGTATGTAATACCAATAGTACCCTTTTGACCGTGAC 502417 Query 115153 ACGATGCAAATTTATCACCAATCTCAGG 115180 ||||||||||||||||| || | ||| Sbjct 502418 GGGATGCAAATTTATCACCGATTTGAGG 502445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455966092035