Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[refseq_20GCF_5F000002515.2_202004-07-02] 7 sequences; 10,729,447 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 174 3e-38 seq1 158 3e-33 seq4 147 5e-30 seq3 86.0 1e-11 >seq5 Length=2234072 Score = 174 bits (192), Expect = 3e-38 Identities = 168/213 (79%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 || |||||||| ||| ||| ||||||||||| ||||||| |||| || | |||||| || Sbjct 75885 ACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGACAAG-GTTCTGCCATCTTC 75943 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | || || || ||||| || || | ||||||||| || ||||| || |||||||| Sbjct 75944 CAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG 76003 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | ||| ||| ||||||| ||||| |||| ||| ||||| | |||||| ||||| Sbjct 76004 AATCTTCGATTTCACGTTATCGATGGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTT 76063 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || |||||||||||||| || ||||| || Sbjct 76064 ACCAGTTAAAGTCTTAACGAAAATTTGCATGTT 76096 Score = 168 bits (186), Expect = 1e-36 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 || |||||||| ||| ||| ||||||||||| ||||||| |||| || | |||||| || Sbjct 74973 ACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGACAAG-GTTCTGCCATCTTC 75031 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | || || || ||||| || || | ||||||||| |||||||| || |||||||| Sbjct 75032 CAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGAATACCTTCTTTGTCTTG 75091 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | || ||| ||||||| ||||| |||| ||||||||| | |||||| ||||| Sbjct 75092 AATCTTAGACTTGACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTT 75151 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || ||||| || ||||| Sbjct 75152 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 75181 Score = 159 bits (176), Expect = 7e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 || |||||||| ||| ||| ||||||||||| ||||||| |||| || | |||||| || Sbjct 75201 ACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGACAAG-GTTCTGCCATCTTC 75259 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | || || || ||||| || || | ||||||||| || ||||| || |||||||| Sbjct 75260 CAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG 75319 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | || ||| ||||||| ||||| |||| ||||||||| | |||||| ||||| Sbjct 75320 AATCTTAGACTTGACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTT 75379 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || ||||| || ||||| Sbjct 75380 ACCGGTTAAGGTTTTGACGAAAATTTGCAT 75409 Score = 159 bits (176), Expect = 7e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 || ||||| || ||| |||||||||||||||||| || | |||| || | |||||| || Sbjct 75657 ACAAGATGCAAAGTGGATTCTTTTTGGATGTTGTAATCGGACAAG-GTTCTGCCATCTTC 75715 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | || || || ||||| || || | ||||||||| || ||||| || |||||||| Sbjct 75716 CAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG 75775 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | || ||| ||||||| ||||| |||| ||||||||| | |||||| ||||| Sbjct 75776 AATCTTAGACTTGACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTT 75835 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || ||||| || ||||| Sbjct 75836 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 75865 Score = 156 bits (172), Expect = 9e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 || ||||| || ||| |||||||||||||||||| || | |||| || | |||||| || Sbjct 75429 ACAAGATGCAAAGTGGATTCTTTTTGGATGTTGTAATCGGACAAG-GTTCTGCCATCTTC 75487 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | || || || ||||| || || | ||||||||| || ||||| || |||||||| Sbjct 75488 CAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTG 75547 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | || ||| ||||||| ||||| |||| ||||||||| | |||||| ||||| Sbjct 75548 AATCTTAGACTTGACGTTATCGATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTT 75607 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || ||||| || ||||| Sbjct 75608 ACCGGTTAAGGTTTTGACGAAAATTTGCAT 75637 >seq1 Length=1062590 Score = 158 bits (174), Expect = 3e-33 Identities = 157/201 (78%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| || || ||| ||| ||||||||||||||||||| |||| || | ||||| || Sbjct 59927 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAG-GTTCTACCATCTTC 59869 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||| || || ||||||||||| | ||||||||| || ||||| ||||||||||| Sbjct 59868 CAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTG 59809 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | || || | || || ||||| |||| ||||||||| | |||||| ||||| Sbjct 59808 AATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTT 59749 Query 283070 ACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| ||||| ||||| Sbjct 59748 ACCAGTCAAGGTCTTGACGAA 59728 >seq4 Length=1715506 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||| ||||||||||||||||| | | || | ||||| || Sbjct 1545579 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 1545520 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || || ||||||||||| | ||||||||| |||||||| |||||||||||| Sbjct 1545519 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 1545460 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || || | || || ||||| |||| ||||||||| | || || |||||| Sbjct 1545459 ATCTTAGACTTAACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATGGTCTTA 1545400 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || ||||| || ||||| Sbjct 1545399 CCTGTTAAGGTTTTGACGAAAATTTGCAT 1545371 >seq3 Length=1753957 Score = 86.0 bits (94), Expect = 1e-11 Identities = 347/539 (64%), Gaps = 6/539 (1%) Strand=Plus/Minus Query 273526 TGTACCACGGCTTCATG-GCTACCATAGGTTCACCCTTCATCAGTCGCTCCACATTACCA 273584 ||||||| ||| ||| ||| |||| || ||||||||||| |||| ||||||| Sbjct 1187153 TGTACCATGGCGCCATCTGCT-CCATTTCCTCTCCCTTCATCAGACGCTTCACATTATTG 1187095 Query 273585 ATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAA 273644 | |||||| | || ||| || |||| || ||| |||||| || |||||||| | Sbjct 1187094 ACAATATCCATTGGATTGAAAGGAGGAATATTAGTACTCCAACCCGTACCAATACCTTCA 1187035 Query 273645 GAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCA 273704 | |||||| || | || | || |||| || | ||| |||| || || | | | Sbjct 1187034 GTACCATTTACTAAAACCATTGGAATAACCGGTAAATACCATTCAGGTTCTACAGTCTGT 1186975 Query 273705 CCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTC 273764 |||| || | || || ||||| || | ||| || | | ||||| |||| ||| Sbjct 1186974 TCATCATCTTGAATATAATTCAATAATGGATCGTCGAGAGTATTGAAAATTTTTCTCGTA 1186915 Query 273765 TGAGGATTCAGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAG 273823 | || || | |||||| || || | |||| | ||| || || ||||| || | Sbjct 1186914 AGTTTGTTTAGCTCCGTGAAGATATATCTTGGCGC-AGCAGAATCTTTACCACC-TGTTG 1186857 Query 273824 C-CTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAAT 273882 | || | ||| || ||| | || | | ||| || || ||| ||| || ||| Sbjct 1186856 CTCTTGTACCGAAGGCACCATTTGGTTTCAACAAGTAAATATTATTGGAACCAACAAAAT 1186797 Query 273883 CCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGT 273942 ||||||| | | || ||||| | | ||| || || || ||||| | | | Sbjct 1186796 CCTGAGCTAGACCGACAATAGTTTGATACAAAGATTGTTCACCATGATGATACCCTGTAT 1186737 Query 273943 GTTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA 274002 |||| | | |||||||| || ||||| ||||| | || || |||| || || |||| Sbjct 1186736 GTTCTGAAACATAACCACCTAATTGAGCGACCTTGATTTCACTTTTCAAATTACGTTTGA 1186677 Query 274003 ATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATA 274061 | || ||| | || |||| ||| || || || ||||| | || || |||||| Sbjct 1186676 AGCAGGCATAGATAACTTTCCTCTGACCAGGTTTCAAACCATCTAAAACAGAGGGAATA 1186618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739106120578