Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F000747785.1_202014-06-
30] 36 sequences; 11,165,408 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 179 4e-40
seq27 156 5e-33
>seq2
Length=945054
Score = 179 bits (198), Expect = 4e-40
Identities = 598/927 (65%), Gaps = 6/927 (1%)
Strand=Plus/Plus
Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939
|| ||||| || | ||||| ||||| || | ||| |||| |||| | ||||||
Sbjct 340593 GCGATAGAAGCCAAGTTACAAACAGCGGTTTCTTCTGGGTTAGAGTATTCAACGATTTCA 340652
Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999
||| | || | | |||||||||||||| || | |||||| | ||||||||
Sbjct 340653 CAACACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAA 340712
Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059
|| |||||||| ||||| || || || |||||||| | |||| ||| | ||||| | |
Sbjct 340713 GCATCCTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTAC 340772
Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTAGTAT 48117
|| | | |||||| | | |||| | || ||||| || |||
Sbjct 340773 CACAACTTTTGAGCCTTGACAGTCTTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTAC 340832
Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177
| |||| ||||||||| || || |||| ||| || || ||| || ||| | |
Sbjct 340833 AATGCTTC--AAATTCATCACCGTAAACATCTGGTAAGCCTGGTGCTTCGTTTGGAGAGA 340890
Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237
||| | |||||| || | || | ||||| |||| || | |||||| ||||| || |
Sbjct 340891 ACAAAGTCCAATCTTCGTTCTTCTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTG 340950
Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297
|| || || || || | | | |||||| || || ||| || | | || | |
Sbjct 340951 CTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGA 341010
Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357
|||| | ||||| | |||||||| || | || | || | |||| |||| || |
Sbjct 341011 AGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGT 341070
Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417
|||| ||||| || | || | |||||| ||||| |||| | | |||||| | |||||
Sbjct 341071 TACCACCTTGGTCAACGTAACGGGCAGTGTTGTTGAAAACACGAATCATTGGAATAATAC 341130
Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476
| || || |||| || || || | ||| ||| || ||| | || || ||| |
Sbjct 341131 CGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGT 341190
Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536
| || ||| |||||||| || | ||||| || | ||||| || | || || |||
Sbjct 341191 GCAA-ACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAA 341249
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| ||||| || ||| || |||| | ||| ||||| |||||||| ||||||
Sbjct 341250 ATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGA 341309
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
||| || | ||| || | ||| || || || || | || || | || | |
Sbjct 341310 GGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGG 341369
Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716
|| || ||||| | ||| || ||||| | || ||||| | || || | |||
Sbjct 341370 TTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATG 341429
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
| ||| | |||||| | |||| ||| || || ||| | | | || || ||||
Sbjct 341430 ATCATGTGTTGAGGACGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCC 341489
Query 48777 AATGTTTTAAAACCAAAATAGTTGTAT 48803
|| || || ||||| || |||||| ||
Sbjct 341490 AAGGTCTTGAAACCGAAGTAGTTGAAT 341516
>seq27
Length=1195410
Score = 156 bits (172), Expect = 5e-33
Identities = 417/631 (66%), Gaps = 25/631 (4%)
Strand=Plus/Minus
Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242
|||||||| |||| ||||| || | |||||| | ||| || ||||| ||||| |
Sbjct 100479 GACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATCCGGAATCCATAGAGCATAA 100420
Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302
||||| || | | || | |||||| || || |||| || | |||| | |||||
Sbjct 100419 AATAAGTCTCGGGCCCTCATTTCTTCTTTTCCGTGATTCTTTCTTAGTTGTAAGAAGTCA 100360
Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362
|| ||||| ||||||||||||| || ||||| | |||| || ||||| || ||
Sbjct 100359 ATAATATCCCCATGCCATGGTTCCAAGTATATACAAAAGGCACCAGGGCGTTTGTTCCCA 100300
Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422
|||||||| | |||||| || || |||||| |||| | | ||| || || | |||||||
Sbjct 100299 CCTTGATCGACATATCTTGCTGTGTTGTTAAAAACCCGCAGCATAGGAACTAAACCATTT 100240
Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTAATTGAAA 48480
|| ||||||| | || || |||||| ||| | || |||||||| || || |
Sbjct 100239 GAAGTACCATTCGACCCTGAGATATAAGCACCATTTGCCCTTATATTTGACACAT--GTA 100182
Query 48481 TACCTATACCACC---TGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAA 48536
| || |||||||| |||| || ||||| | |||| | || ||| || | ||||
Sbjct 100181 TTCCAATACCACCAGATGCC---TTTGATATCAAAGCAGTCTTGTGTAA-AGTCTTATAA 100126
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| || || ||| || ||| |||| | ||||| || |||| | |||
Sbjct 100125 ATACCATCAATAGAGTCTTCTTCCATAGCCACAAGAAAGCATGATGACAAATATTGATTT 100066
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
|| || ||| || || || || || || |||||||| | || | ||| | |||
Sbjct 100065 ACTGTACCGCTATTGAACAAAGTAGGTGAAGCGTGAATAAAATACTTTTGTGACATTAAT 100006
Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGA--------TGTATACCTATAGATA 48708
| || || |||| || | |||||||| |||| | || ||| | | || |
Sbjct 100005 TGGTAAGTCTCAAGTACTGCATCTATAT--CATTAAATGGTCCGTGAATAGCAAGAGCAA 99948
Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATT---TTGTTATTTATTTTCAAAAGAT 48765
| | ||| |||||| | || || ||||| | || | || ||| | |||| | ||
Sbjct 99947 CTCTCATGAACATAAACTGCGGAGTTTCATAAGTTTCCTCATTGTTTCTCTTCATCAAAT 99888
Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATA 48796
|||| || | ||| || ||||||||||
Sbjct 99887 ATGACTTACAAAGTGTCTTCCAACCAAAATA 99857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108547051040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |