Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F000747785.1_202014-06- 30] 36 sequences; 11,165,408 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq27 165 4e-36 seq2 150 9e-32 >seq27 Length=1195410 Score = 165 bits (182), Expect = 4e-36 Identities = 186/248 (75%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 25901 AAATG--CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTG 25958 ||||| |||||| |||| | ||||| | |||||| | ||| |||||||| | | Sbjct 100484 AAATGGACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATCCGGAATCCATAGAG 100425 Query 25959 CATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGA 26018 |||||||||| |||| || ||||||||||||||||||||||||||| |||| | ||||| Sbjct 100424 CATAAAATAAGTCTCGGGCCCTCATTTCTTCTTTTCCGTGATTCTTTCTTAGTTGTAAGA 100365 Query 26019 AATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTC 26078 | |||| |||||| ||||||||||| || || ||| ||| ||| | ||| Sbjct 100364 AGTCAATAATATCCCCATGCCATGGTTCCAAGTATATACAAAAGGCACCAGGGCGTTTGT 100305 Query 26079 CTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATC 26138 ||||||||||| || |||||||| || | || ||||| || ||| |||||||| | Sbjct 100304 TCCCACCTTGATCGACATATCTTGCTGTGTTGTTAAAAACCCGCAGCATAGGAACTAAAC 100245 Query 26139 CAGTTGAA 26146 || ||||| Sbjct 100244 CATTTGAA 100237 Score = 125 bits (138), Expect = 4e-24 Identities = 365/545 (67%), Gaps = 23/545 (4%) Strand=Plus/Minus Query 24648 TATTTTCTTTTTCTAATGTAAATTGCTTAGCT-GATACTGCTGGTTTAGTTCTAAGATAA 24706 ||||||| | | || |||||||| |||| || | |||| | ||||||||||||| Sbjct 101729 TATTTTCATCATTCAAAGTAAATTGTATAGCACGAGAA-GCTGCCTGAGTTCTAAGATAA 101671 Query 24707 TACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA 24766 ||||| || || |||||| ||||||||| | ||||| ||||||||||||| |||| | Sbjct 101670 TACATCCCTGTCTTCAATCCCTTCTTCCATGCATAAAAGTGCATTGATGTTAATTTTCCC 101611 Query 24767 AT-GTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCT 24825 || ||| | | | | ||| ||||||| | || |||| || || || | ||| Sbjct 101610 ATAGTTGGTTCACGC-AAATACAAGTTTAGAGACTGAGACTGATCAATGAATGGAGCTCT 101552 Query 24826 ATCTGCAGCTAAG-TCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTAT-CTC 24883 |||| | | ||| || || | |||| || || || || | ||||||||| | Sbjct 101551 ATCT-CTGGAAAGATCGATCAATTTTTTTTGAGAAATTTCCCAAACAGTTTTGTATAAAC 101493 Query 24884 TCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAG- 24942 || || ||||| || | || |||| |||||| || ||||| ||| | ||| Sbjct 101492 TC-TTCATCTCCTCCGGCACACCATCAATGGTTTGAATGGAACCATTATCTTT---TAGA 101437 Query 24943 ATTCAATCTCATA---TTCGGTGTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTG 24999 |||| || | || || || |||| | || ||||| || ||| | || | Sbjct 101436 ATTCTATTTTTTAGCTTTTCGT-TCCATACTTTCATTTTACAAAAATCATCCACCATATA 101378 Query 25000 TTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTG 25057 || ||| | ||| ||||||||||||| | || || || || |||| || || || Sbjct 101377 TTGATTAACGATTGTAAATTCTCCAGATAGCACCCTCCTGGAATAGATA--TTAGAGGTC 101320 Query 25058 AATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAAT 25117 | ||||| || |||| | || || ||||||||||| || || ||||||||| Sbjct 101319 ATAGGTTCGAACGATTCTGTGAAACCCAATATTTGAGAAGTTGAGGCAGTTGGCATTGGA 101260 Query 25118 GCTATTAATAGCGAATTTCTCAAACCA---TATTTAACAATCTCTTGTTTTAATTTATCC 25174 | | ||| || ||||| ||||||||| ||| ||| | ||| ||||| ||||| Sbjct 101259 CCAACTAAAAGTGAATTCCTCAAACCAGGCCCATTAGTAATTTGTTGCTTTAAGGTATCC 101200 Query 25175 CAATC 25179 ||||| Sbjct 101199 CAATC 101195 >seq2 Length=945054 Score = 150 bits (166), Expect = 9e-32 Identities = 323/478 (68%), Gaps = 6/478 (1%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||| |||| ||| |||||| | || | ||| ||| ||| ||| || | |||||| Sbjct 340881 TTTGGAGAGAACAAAGTCCAATCTTCGTTCTTCTCGACTCTCTTCATGAAAAGATCTGGG 340940 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | ||| || || ||||| || | |||||||| || ||||| |||||| | Sbjct 340941 ATCCATAGTGCTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTG 341000 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | || | ||| || || ||||||||||||||||| || | || | || || ||| Sbjct 341001 ATGTCGACGAAGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCA 341060 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 ||| || |||||||| || ||||| | ||||| | |||||||| | |||| Sbjct 341061 GGTCTCTTGTTACCACCTTGGTCAACGTAACGGGCAGTGTTGTTGAAAACACGAATCATT 341120 Query 26129 GGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||| |||| | ||| ||| ||||| || | | ||| | || || || || | ||| Sbjct 341121 GGAA-TAATACCGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAAT 341179 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAA 26245 | |||| || | ||| || |||||||| || || || ||||| || | || Sbjct 341180 GTTGTGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAA 341239 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | || ||| |||| |||| ||| ||| | ||||| | | || ||||| || || Sbjct 341240 A--GTGTCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGAC 341297 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATC 26363 | ||| | ||||| || || | ||| || | ||| || | ||| || || | |||| Sbjct 341298 ATTTGTGGATGAGGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATC 341355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039888978700