Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 242 4e-59 seq3 170 2e-37 seq5 152 6e-32 >seq7 Length=940253 Score = 242 bits (268), Expect = 4e-59 Identities = 584/882 (66%), Gaps = 4/882 (0%) Strand=Plus/Plus Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 ||||||| || || || || | |||||||||||| |||||||| |||||||| || || | Sbjct 341297 ACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAAGCATCCTTGTATAGCA 341356 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 ||||||| ||||||||||| | || | ||| | || || | ||| | |||||| Sbjct 341357 TGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTACCACAACTTTTGAGCCT 341416 Query 53901 TTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTC 53958 | | | ||| || | | |||||| ||||| || |||||| |||||| || Sbjct 341417 TGACAGTC--TTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTACAATGCTTCAAATTC 341474 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018 || || |||||| || || || ||| | ||| | | ||| | ||| ||| | Sbjct 341475 ATCACCGTAAACATCTGGTAAGCCTGGTGCTTCGTTTGGAGAGAACAAAGTCCAATCTTC 341534 Query 54019 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078 || | || |||| ||||| || ||||| || ||||| || ||| || | ||||| Sbjct 341535 GTTCTTCTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTGCTGGGAACAAGTCTCT 341594 Query 54079 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 54138 | | ||| || || || |||||| | | |||| ||| | | ||||| || Sbjct 341595 TGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGAAGTCGAAGATATCTGA 341654 Query 54139 ATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 54198 ||||| || || | ||| | || | | ||||| | ||||| || || || || | Sbjct 341655 GTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGTTACCACCTTGGTCAAC 341714 Query 54199 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 54258 ||| | ||| ||||| || |||| | | ||||||||||||||| || || | ||| || Sbjct 341715 GTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCGTTAGAAGTACCGTT 341774 Query 54259 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318 || || | || || || | | |||||| || ||| | ||| || || || Sbjct 341775 AGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGTGCAAACCAATACCACC 341834 Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378 || | |||||||| | || ||| || || || || || || || || || ||| Sbjct 341835 AGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAAATACCTTCAATGGAATC 341894 Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438 ||| ||||| | ||| ||||| |||||||| || || ||| || ||||| || Sbjct 341895 TTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGAGGAGTACCAGCATTGAA 341954 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 | || || |||||||| || || || || ||| | ||| ||||| || || | | | Sbjct 341955 AAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGGTTGTAAGTTTCCAAAAC 342014 Query 54499 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 54558 || ||||| | || || || || || || | ||| | |||||| ||||| | Sbjct 342015 CTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATGATCATGTGTTGAGGACG 342074 Query 54559 TTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 |||| | | ||| ||| ||| | |||||||| || |||||| || || ||||| || Sbjct 342075 TTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCCAAGGTCTTGAAACCGAA 342134 Query 54619 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 |||||| || || |||| ||||| | ||| | ||||| Sbjct 342135 GTAGTTGAATTGGAAATCTCTGTCGTAGACAATCGCAGAGTT 342176 >seq3 Length=1564943 Score = 170 bits (188), Expect = 2e-37 Identities = 578/886 (65%), Gaps = 22/886 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| || ||| | |||||||| ||||| |||||||| | || || || ||| Sbjct 416211 TTTTGGTAGTCTGACACTCTCTTTTCGAAGAAATTGGTTTTACCGGCCAAGGAAATGTTT 416152 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCTTTTAAATCCCAATTCAGAAA 23961 ||||| || ||| |||| || || || || ||| ||||| | | || || || | Sbjct 416151 TCCATAAAGTCGAATGGGTTAGTGACGTTGTAGTATTTCTTGTTA--CCTAAAGCAACCA 416094 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | ||| ||||| ||||| || | ||| ||||||| ||| ||||| || | | Sbjct 416093 GTAGTCTGTCTGCAACAAATTCGACGTATTGGTTCATCAAATCAGCGTTCATACCCAATA 416034 Query 24022 GTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 | ||| || ||||| | | ||| | |||| ||| || || || ||||| || Sbjct 416033 GAGAAACGGGTAGAGCGTCGATGAAGTATCTCTT-TTCGATCTCAACAGCTTCTGTGATG 415975 Query 24081 ATAGATCTT---ACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136 || |||| || | | | | || | | | | | ||||| | || | |||||| Sbjct 415974 AT---TCTTTCGACAATCTTTGGATCTGGCTTGTT-CTTCAAATGATGGAATAGCAAACA 415919 Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 || || ||| ||| | ||| || ||||| | ||| |||||||| || || || | || Sbjct 415918 GGCAAAGTCGGTGTGCAAACCTTCATCTCTGCAAATCAATTCGTTTGAGAAGGTCAAACC 415859 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||| | || ||| || | ||| || |||| || || || ||||| || || | Sbjct 415858 TGGCATCAAACCCTTCTTCTTCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAAAACAC 415799 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT---GTAT 24313 ||||| || || || || |||| | |||||| | || ||| ||||| | || Sbjct 415798 ACCTTCCACGGCAGCGAACGCAACCAATCTTTCAGCGTATAGGGCTTCGTCATCACGAAT 415739 Query 24314 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||| || || ||||| | ||||| | ||| | || || || || || ||||| | Sbjct 415738 CCATCTAATG-GCCCATTGAGCCTTTTCTTTGATTTGTGGAATGGTTTCAATGGCATTCA 415680 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 | | ||| | ||| ||| ||| || | || || |||||||| | ||| ||| Sbjct 415679 ACAAGAAGTCGTGTTCCTTAGGATCCTTGATGTAAGTGTCAATCAACAACGAATAAGTTT 415620 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | || || |||||||| || ||||| || ||||||||||| | || || | ||| | Sbjct 415619 CGGAGTGGATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGAATTT 415560 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | || || | | || ||| | || ||||| ||||| || || || || |||| Sbjct 415559 GCACCTCAGCAGAGAAGTTTTCCACCAAGTTTTCGTTCACGATACCATCGGAAGCAGCAA 415500 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTTAGTTTATTCCAAT 24609 | ||||| | || || ||| || | ||| ||| || || || ||||| | Sbjct 415499 AGAACGCAAGCACTCTGGAGATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCCAGT 415440 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 ||| | ||| || || | ||| | |||||| | |||||||| || ||||| || | | Sbjct 415439 CATGAAGATCCTTGGACAAATCGATTTCTTCAGCAGTCCAAAAAGAGGCCTCGGCTCTCT 415380 Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| | |||||| || || || | ||||| |||| ||||| Sbjct 415379 TATAAGCCTCCCAGATTTCGTGGTACTTGATTGGGAAAAGCACAAA 415334 >seq5 Length=1351988 Score = 152 bits (168), Expect = 6e-32 Identities = 207/287 (72%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 |||||| |||| | | ||||| ||| | | || | || |||| |||||| ||||| Sbjct 97103 TTCATCTGGACTAAAAATGGACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATC 97044 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 |||||||| ||||| ||||| |||| || || ||| || ||||| |||||| Sbjct 97043 CGGAATCCATAGAGCATAAAATAAGTCTCGGGCCCTCATTTCTTCTTTTCCGTGATTCTT 96984 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA- 54167 | | || | | ||| | |||||||| |||||| |||||||||||||| || || Sbjct 96983 TCTTAGTTGTAAGAAGTCAATAATATCCCCATGCCATGGTTCCAAGTATAT--ACAAAAG 96926 Query 54168 -CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | ||||| |||||||| || || ||||| | ||||| || ||||| ||| |||| | | Sbjct 96925 GCACCAGGGCGTTTGTTCCCACCTTGATCGACATATCTTGCTGTGTTGTTAAAAACCCGC 96866 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 | ||| |||| | |||||| || | |||||| | ||| |||||||| Sbjct 96865 AGCATAGGAACTAAACCATTTGAAGTACCATTCGACCCTGAGATATA 96819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721533206320