Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq3 102 6e-17 seq5 93.3 3e-14 >seq2 Length=1688883 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||||||||| ||||| ||||||||||||||||| | | ||| | | ||||| ||||| Sbjct 907959 GTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGATAGAGTTCTTCCGTCTTCTAATTG 907900 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| |||||| | || | ||||||||| || || | ||||||||||| || | Sbjct 907899 TTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATCTT 907840 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| ||||||| | || ||| | |||||| | || || || Sbjct 907839 AGACTTCACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCTGT 907780 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337 || || || ||||| |||||||||||||| |||| Sbjct 907779 TAACGTCTTGACAAAGATTTGCATTTTTAATGTCTT 907744 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||||||||| ||||| ||||||||||||||||| | | ||| | | ||||| ||||| Sbjct 908187 GTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGATAGAGTTCTTCCGTCTTCTAATTG 908128 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| |||||| | || | ||||||||| || || | |||||||| || ||| | Sbjct 908127 TTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTT 908068 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| ||||||| | ||| ||| | ||||| | || || || Sbjct 908067 AGACTTCACATTGTCAATAGTGTCAGAAGATTCGACTTCCAAAGTGATAGTCTTACCTGT 908008 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || || || |||||||| Sbjct 908007 CAAAGTCTTGACGAAGATTTGCAT 907984 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| ||||| ||||| ||||| ||||||||||||| | ||| | | ||||| Sbjct 908648 ACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGATAGAGTTCTTCCGTCTTCT 908589 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| |||||| | || | ||||||||| || || | ||||| ||||| | Sbjct 908588 AATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCTTTATCTTGA 908529 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | ||| ||||||| | ||| ||| | ||||| | || Sbjct 908528 ATCTTAGACTTCACATTATCAATAGTGTCAGAAGATTCGACTTCCAAAGTGATAGTCTTA 908469 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || || |||||||| Sbjct 908468 CCTGTCAAAGTCTTGACGAAGATTTGCAT 908440 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||||||||| ||||| ||||||||||||||||||| | ||| | | ||||| ||||| Sbjct 908415 GTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCGGATAGAGTTCTTCCGTCTTCTAATTG 908356 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || | ||||||||| || || | |||||||| || ||| | Sbjct 908355 TTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTT 908296 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || | ||| ||||||| | ||| ||| | ||||| | || || || Sbjct 908295 AGATTTCACATTGTCAATAGTGTCAGAAGATTCGACTTCCAAAGTGATAGTCTTACCTGT 908236 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || || || |||||||| Sbjct 908235 CAAAGTCTTGACGAAGATTTGCAT 908212 >seq3 Length=1564943 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | |||||| | |||| |||||| || ||||| ||||| ||||||||||| | | Sbjct 1518409 CCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 1518468 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||||||||||| || || ||| |||| | ||||||||| || || Sbjct 1518469 AAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 1518528 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||| | |||||| | ||| |||||| | ||| | Sbjct 1518529 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCGACT 1518588 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAA 18317 || | |||||| | || || ||||| || || || ||| Sbjct 1518589 TCCAAAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAA 1518627 >seq5 Length=1351988 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | || ||| ||| ||||||| Sbjct 1201220 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 1201161 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 1201160 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 1201101 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||| | ||| ||| | ||| || | || Sbjct 1201100 ATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATAGTCTTA 1201041 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | || || || ||||||||||| Sbjct 1201040 CCAGTTAGGGTCTTGACGAAAATTTGCAT 1201012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343958390705