Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 120 6e-22 seq1 105 1e-17 seq7 89.7 1e-12 >seq3 Length=1564943 Score = 120 bits (132), Expect = 6e-22 Identities = 298/445 (67%), Gaps = 17/445 (4%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || ||||| || ||||| | || || |||| | ||||| |||| |||||| Sbjct 415775 GTTGCGTTCGCTGCCGTGGAAGGTGTGTTTTTCTCTGGTTCCTTCGCTGCCATCTTCTGG 415834 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | |||| | |||| ||| | |||| ||| || || || |||| || || Sbjct 415835 TTGAAGAAGAAGGGTTTGATGCCAGGTTTGACCTTCTCAAACGAATTGATTTGCAGAGAT 415894 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||| || |||| || | | |||| || | | Sbjct 415895 GAAGGTTTGCACACCGACTTTGCCTGTTTGCTATTCCATCA----TTTGAAGAA---CAA 415947 Query 102098 TCAAGAGA-AAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || |||| | |||| | |||| ||||| || || ||| |||| | Sbjct 415948 GCCAGATCCAAAGATTGTCGAAAGAATCATCACAGAAGCTGTTGAGATCGAA-AAGAGAT 416006 Query 102154 TCT-CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 || || | | || || ||| || |||| |||||| | ||||||| ||| | Sbjct 416007 ACTTCATCGACGCTCTACCCGTTTCTCTATTGGGTATGAACGCTGATTTGATGAACCAAT 416066 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAA 102270 || | |||||||| ||||| | |||| |||||| | || || ||||| |||| || Sbjct 416067 ACGTCGAATTTGTTGCAGACAGACTACTGGTTGCTTTAGGTAACAAGAAAT--ACTACAA 416124 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 || || ||||| ||| || ||||| || |||||| | | ||| ||||| || || Sbjct 416125 CGTCACTAACCCATTCGACTTTATGGAAAACATTTCCTTGGCCGGTAAAACCAATTTCTT 416184 Query 102331 TGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 416185 CGAAAAGAGAGTGTCAGACTACCAA 416209 >seq1 Length=1722779 Score = 105 bits (116), Expect = 1e-17 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443 |||||| ||||| ||||||||||| || || || ||||||||| | ||||| || || Sbjct 858527 GATAGACGTGAGGGTGATTTGGGACCAGTTTATGGGTTCCAATGGAGACATTTCGGAGCA 858586 Query 35444 GAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATA 35503 ||||| | || ||| |||||| | ||| | ||| ||||||| || | || | Sbjct 858587 GAATACAAGACATGTGACGATGATTATTCGGGACAAGGTGTTGATCAGTTAAGCGATGTG 858646 Query 35504 CTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 | | | ||| |||| ||||| | ||||||||||| |||||| | |||||||| || Sbjct 858647 ATTCATAAGTTGA-AGAACAATCCTTACGATAGAAGGATTATTATGTCAGCATGGAACCC 858705 Query 35563 TATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | ||| | | ||||||||||| |||||||| || |||| || ||||| Sbjct 858706 TCCTGATTTCCCAAAAATGGCTCTTCCACCATGCCATGTGTTCTCTCAGTTCTATGT 858762 >seq7 Length=940253 Score = 89.7 bits (98), Expect = 1e-12 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| ||| | || | || ||||| ||||| ||||| || || ||||| | ||| Sbjct 341812 TGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTG 341871 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 || |||||||| |||||| ||| || | | | ||| ||||| || || || | ||| Sbjct 341872 TCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGT 341931 Query 94894 GGTGTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 || ||| || ||| ||| || ||||| || ||||| || || || || || Sbjct 341932 GGA-TGAGGAGTACCAGCATTGAAAAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAGA 341990 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| || | || ||||| | || || || ||| ||||| || ||||||||||| Sbjct 341991 CATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCAC 342050 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTCA 95040 | ||| ||||||| ||||| || ||| Sbjct 342051 TCTCATGATCATGTGTTGAGGACGTTCA 342078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583885888595