Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 105 7e-18 seq2 100 3e-16 seq7 98.7 1e-15 >seq3 Length=1564943 Score = 105 bits (116), Expect = 7e-18 Identities = 318/485 (66%), Gaps = 17/485 (4%) Strand=Plus/Plus Query 52565 AAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTC 52624 |||||| | | ||||| | | |||||| | ||| ||||| | || ||| | Sbjct 415713 AAAAGGCTCAATGGGCCATTAGATGGATTCGTGATGACGAAGCCCTATACGCTGAAAGAT 415772 Query 52625 TGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTT 52684 |||| ||||| ||| ||||||||||||||||| || ||| || || || || || | Sbjct 415773 TGGTTGCGTTCGCTGCCGTGGAAGGTGTGTTTTTCTCTGGTTCCTTCGCTGCCATCTTCT 415832 Query 52685 ACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCG 52744 | || | ||| | ||||| || | || || ||||| ||||| | | | Sbjct 415833 GGTTGAAGAAGAAGGGTTTGATGCCAGGTTTGACCTTCTCAAACGAATTGATTTGCAGAG 415892 Query 52745 ACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATT--ATAATACGCGCGTTAAAGAAA 52801 | ||||| ||||||| || ||||| |||||| |||| || || || ||||| Sbjct 415893 ATGAAGGTTTGCACACCGACTTTGCCTGTTTGCTATTCCATCAT-------TTGAAGAAC 415945 Query 52802 AATTGTCATATGAAAAAATTCTAGA---CATGTTTAAAGAGGCCGTCGACATTGAAAA-A 52857 || | || || ||| ||| | || || | | ||| || || || || ||||| | Sbjct 415946 AA--GCCAGATCCAAAGATTGTCGAAAGAATCATCACAGAAGCTGTTGAGATCGAAAAGA 416003 Query 52858 GAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGC 52917 || | || | |||||| ||||||| || | ||||| |||||||| ||||| | Sbjct 416004 GA-TACTTCATCGACGCTCTACCCGTTTCTCTATTGGGTATGAACGCTGATTTGATGAAC 416062 Query 52918 GAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTAT 52977 | ||| |||| |||||||| |||||||| || | | ||| | ||||||||| Sbjct 416063 CAATACGTCGAATTTGTTGCAGACAGACTACTGGTTGCTTTAGGTAACAAGAAATACTAC 416122 Query 52978 AATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTT 53037 || | |||||| || |||||| | ||||| || | | || ||||| || || Sbjct 416123 AACGTCACTAACCCATTCGACTTTATGGAAAACATTTCCTTGGCCGGTAAAACCAATTTC 416182 Query 53038 TTCGA 53042 ||||| Sbjct 416183 TTCGA 416187 >seq2 Length=1688883 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| |||||||||| ||||| || ||||||||||| || ||| Sbjct 908438 CCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCGGAT 908379 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | |||||||||||| | |||| | ||| || || ||||| Sbjct 908378 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGGA 908319 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | ||||| | | || || Sbjct 908318 ATACCTTCCTTGTC-TTGAATCTTAGATTTCACATTGTCAATAGTGTCAGAAGATTCGAC 908260 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 908259 TTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCATA 908211 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| |||||||||| ||||| || ||||||||||| || || Sbjct 908210 CCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGAT 908151 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | |||||||| ||| | |||| | ||| || || ||||| Sbjct 908150 AGAGTTCTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGA 908091 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||| | | || || Sbjct 908090 ATACCTTCCTTGTC-TTGAATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCGAC 908032 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 908031 TTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCATA 907983 >seq7 Length=940253 Score = 98.7 bits (108), Expect = 1e-15 Identities = 576/900 (64%), Gaps = 29/900 (3%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 || || || |||||||| ||||| || ||||| || ||| | |||| || ||||| Sbjct 341221 GCGATAGAAGCCAAGTTACAAACAGCGGTTTCTTCTGGGTTAGAGTATTCAACGATTTCA 341280 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTT-GATTGCTTTTGCGGTTACA 153751 |||||| || | || || || | ||| | |||| |||| || || |||||| Sbjct 341281 CAACACAAGTTCGAAGACTTGAT-AGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACA 341339 Query 153752 AGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATA--GTA 153809 ||| ||||||||||||||| |||| || || ||||||| |||| ||| | ||| ||| Sbjct 341340 AGCATCCTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTA 341399 Query 153810 CGCATCAA--TGTGACCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCT-TCGTAGTGT 153866 | || ||| | ||| | | || | || | | | |||| ||| ||||| || Sbjct 341400 C-CA-CAACTTTTGAGCCTTGACAGTCTTTC---TACCACGGCCTTCTCTCTCGTAACGT 341454 Query 153867 TTGTACCAGTATTCAAACTCATCACC--AAACGTATTGTTAAGCTCGGGACATTCGTTGG 153924 | |||| | |||||| |||||||| |||| | || ||||| | || |||||| | Sbjct 341455 TCGTACAATGCTTCAAATTCATCACCGTAAACAT-CTGGTAAGC-CTGGTGCTTCGTTTG 341512 Query 153925 GACACATCAGTGACC-ATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACC 153983 || | | || | || ||| | | |||| | || | ||| || | ||| || | | Sbjct 341513 GAGAGAACAAAGTCCAATCTTCGTTCTTCTCG-ACTCTCTTCATGAAAAGATCTGGGATC 341571 Query 153984 CATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATG 154043 ||||| || | || ||| | || | ||||| | || ||| | ||| Sbjct 341572 CATAGTGCTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATG 341631 Query 154044 TGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTA 154103 | | || ||| | || || | ||||| || || | ||| | || || || Sbjct 341632 TCGACGAAGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGT 341691 Query 154104 CGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGT 154160 | |||| || || || | |||| ||| | | ||||||||||| |||| ||| || Sbjct 341692 CTCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGA 341751 Query 154161 AGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGG--CCTCGAACGC 154218 | | |||| | | |||||||| ||| ||| | | ||| |||| | Sbjct 341752 ATAATACCGTTAGAAGTACCGTTAGTACCAGCAATGT--AAGAACCGGTAGAACGAATGT 341809 Query 154219 TGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATG 154278 ||| | || || |||||||| || || || ||||||||||| || || ||||| | Sbjct 341810 TGTGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAG 341869 Query 154279 TGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCT 154338 ||| || ||||| |||| ||| | ||||| || |||||||||||| ||| | Sbjct 341870 TGTCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTT 341929 Query 154339 GCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTA-CATCTTTGTG 154397 | ||| ||||| || ||| || | || || ||||| ||| | ||||| | | Sbjct 341930 GTGGATGAGGAGTACCAGCATTGAAAAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAG 341989 Query 154398 CTCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCT-CCAAAGATACCTAGAGC 154456 || | || |||| | | | || ||||| || ||| || |||||| | ||| Sbjct 341990 -ACATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATC-TCTACCGTGGATACCGACAGC 342047 Query 154457 TATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAATTTTTATCAGGTA 154516 | | |||| |||||||||| | ||| ||||| || |||| ||| ||| || ||| Sbjct 342048 CACTCTCATGATCATGTGTTGAGGACGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTA 342107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063944192800