Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-18 seq5 86.0 4e-12 >seq2 Length=1688883 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| || || ||||| || || ||| || ||||| || || || ||| Sbjct 908667 ACCTCCTCTCAACCTCAAGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGA 908608 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || || |||||||| || ||||| ||||| | ||| ||||| |||| Sbjct 908607 TAGAGTTCTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGG 908548 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| || || || || ||| ||| || | | || || Sbjct 908547 AATACCTTCTTTATCTTGAATCTTAGACTTCACATTATCAATAGTGTCAGAAGATTCGAC 908488 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || |||||||| || || |||||||| Sbjct 908487 TTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 908440 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || || || || || |||||||| || || ||| Sbjct 908439 ACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCGGA 908380 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || || |||||||| || ||||| ||||| | ||| ||||| |||| Sbjct 908379 TAGAGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGG 908320 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| || ||| || | ||| ||| || | | || || Sbjct 908319 AATACCTTCCTTGTCTTGAATCTTAGATTTCACATTGTCAATAGTGTCAGAAGATTCGAC 908260 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || |||||||| || || |||||||| Sbjct 908259 TTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 908212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || || || || || |||||||| || || || Sbjct 907983 ACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGA 907924 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || || |||||||| || ||||| ||||| | ||| ||||| |||| Sbjct 907923 TAGAGTTCTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGG 907864 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| || || || || | ||| ||| || | | || || Sbjct 907863 AATACCTTCCTTATCTTGGATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCAAC 907804 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 907803 TTCCAAAGTGATGGTCTTACCTGTTAACGTCTTGACAAAGATTTGCAT 907756 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || || || || || |||||||| || || || Sbjct 908211 ACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGA 908152 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || || |||||||| || ||||| ||||| | ||| ||||| |||| Sbjct 908151 TAGAGTTCTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGG 908092 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| || || || | ||| ||| || | | || || Sbjct 908091 AATACCTTCCTTGTCTTGAATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCGAC 908032 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || |||||||| || || |||||||| Sbjct 908031 TTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 907984 >seq5 Length=1351988 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| || || || || ||||| || || || || Sbjct 1201239 ACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGA 1201180 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||||||| || || ||||| ||||| | ||| ||||| |||| Sbjct 1201179 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGG 1201120 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || ||||| | ||| || || | | || || Sbjct 1201119 AATACCTTCCTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGAC 1201060 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 || | ||||| || ||||| |||| ||||| || || ||||||||| | |||| Sbjct 1201059 TTCCAAGGTAATAGTCTTACCAGTTAGGGTCTTGACGAAAATTTGCATGGCTTGTCT 1201003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777561085332