Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10-
03] 9 sequences; 10,895,581 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 3e-27
seq5 118 9e-22
seq3 109 5e-19
>seq2
Length=1688883
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||||| || ||||| || ||||| | ||||| ||| | |
Sbjct 908212 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAGACTATCACTTTGGAAGTCGAATCTTCT 908271
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | ||| || |||||||||||||| |||||||| || || |||
Sbjct 908272 GACACTATTGACAATGTGAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 908331
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | | || ||||| || ||||| ||||| || | || | ||||| ||||||
Sbjct 908332 CAAAGATTGATTTTTGCTGGTAAACAATTAGAAGACGGAAGAACTCTATCCGACTACAAC 908391
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| ||||| || | || ||||| ||| ||||| | || |||
Sbjct 908392 ATTCAAAAGGAATCTACACTTCACTTAGTCTTGAGATTGAGAGGTGGT 908439
Score = 127 bits (140), Expect = 2e-24
Identities = 168/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|||| |||||||| ||||| || || ||||| ||||| || ||||| | ||||| |||
Sbjct 907751 TAAAAATGCAAATCTTTGTCAAGACGTTAACAGGTAAGACCATCACTTTGGAAGTTGAAT 907810
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
| | || || | ||| || | || || || ||||| ||||| |||||||| || |
Sbjct 907811 CTTCTGACACTATTGACAATGTGAAGTCTAAGATCCAAGATAAGGAAGGTATTCCTCCAG 907870
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
| |||||| | | || ||||| || ||||| ||||| || | || | || || |
Sbjct 907871 ACCAACAAAGATTGATTTTTGCGGGTAAACAATTAGAAGACGGAAGAACTCTATCTGACT 907930
Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||||| ||||| || | || ||||| ||| ||||| | || |||
Sbjct 907931 ACAACATTCAAAAGGAATCTACACTTCACTTAGTCTTGAGATTGAGAGGTGGT 907983
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||||| || ||||| || ||||| | ||||| ||| | |
Sbjct 907984 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAGACTATCACTTTGGAAGTCGAATCTTCT 908043
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | || || |||||||||||||| |||||||| || || |||
Sbjct 908044 GACACTATTGACAATGTGAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 908103
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | | || ||||| || ||||| ||||| || | || | || || ||||||
Sbjct 908104 CAAAGATTGATTTTTGCGGGTAAACAATTAGAAGACGGAAGAACTCTATCTGACTACAAC 908163
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| ||||| || | || ||||| ||| ||||| | || |||
Sbjct 908164 ATTCAAAAGGAATCTACACTTCACTTAGTCTTGAGATTGAGAGGTGGT 908211
>seq5
Length=1351988
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || |||| ||||| || | || | ||||| ||| | ||
Sbjct 1201012 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAGACTATTACCTTGGAAGTCGAATCTTCC 1201071
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || ||||||||||| |||||||| || || |||
Sbjct 1201072 GACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 1201131
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | | || ||||| || || || || || ||| | || | || || ||||||
Sbjct 1201132 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTACAAC 1201191
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||| ||||| ||| | || || || ||| ||||| | || |||
Sbjct 1201192 ATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGT 1201239
>seq3
Length=1564943
Score = 109 bits (120), Expect = 5e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || || || ||||| || ||||| | ||||| ||| | | || ||| |
Sbjct 1518627 TTTCGTCAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCTGACACCAT 1518568
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || |||||||||||||| ||||||||||| || |||||| | |
Sbjct 1518567 TGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAAAGATT 1518508
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| ||||| || || || || || || | || | || || |||||||| |||||
Sbjct 1518507 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCTGACTACAACATCCAAAA 1518448
Query 22407 AGAATCCACCATACATTTAGTTTTGCGA 22434
||||||||| | || || || ||| ||
Sbjct 1518447 GGAATCCACCCTTCACTTGGTCTTGAGA 1518420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727953961085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |