Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 179 4e-40 seq5 156 5e-33 >seq7 Length=940253 Score = 179 bits (198), Expect = 4e-40 Identities = 598/927 (65%), Gaps = 6/927 (1%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 || ||||| || | ||||| ||||| || | ||| |||| |||| | |||||| Sbjct 341221 GCGATAGAAGCCAAGTTACAAACAGCGGTTTCTTCTGGGTTAGAGTATTCAACGATTTCA 341280 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 ||| | || | | |||||||||||||| || | |||||| | |||||||| Sbjct 341281 CAACACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAA 341340 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || |||||||| ||||| || || || |||||||| | |||| ||| | ||||| | | Sbjct 341341 GCATCCTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTAC 341400 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTAGTAT 48117 || | | |||||| | | |||| | || ||||| || ||| Sbjct 341401 CACAACTTTTGAGCCTTGACAGTCTTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTAC 341460 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | |||| ||||||||| || || |||| ||| || || ||| || ||| | | Sbjct 341461 AATGCTTC--AAATTCATCACCGTAAACATCTGGTAAGCCTGGTGCTTCGTTTGGAGAGA 341518 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 ||| | |||||| || | || | ||||| |||| || | |||||| ||||| || | Sbjct 341519 ACAAAGTCCAATCTTCGTTCTTCTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTG 341578 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || || || || || | | | |||||| || || ||| || | | || | | Sbjct 341579 CTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGA 341638 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 |||| | ||||| | |||||||| || | || | || | |||| |||| || | Sbjct 341639 AGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGT 341698 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 |||| ||||| || | || | ||||| ||||| |||| | | |||||| | ||||| Sbjct 341699 TACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATAC 341758 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476 | || || |||| || || || | ||| ||| || ||| | || || ||| | Sbjct 341759 CGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGT 341818 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | || ||| |||||||| || | ||||| || | ||||| || | || || ||| Sbjct 341819 GCAA-ACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAA 341877 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| || ||| || |||| | ||| ||||| |||||||| |||||| Sbjct 341878 ATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGA 341937 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | ||| || | |||||| || || || | || || | || | | Sbjct 341938 GGAGTACCAGCATTGAAAAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGG 341997 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 || || ||||| | ||| || ||||| | || ||||| | || || | ||| Sbjct 341998 TTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATG 342057 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | |||||| | |||| ||| || || ||| | | | || || |||| Sbjct 342058 ATCATGTGTTGAGGACGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCC 342117 Query 48777 AATGTTTTAAAACCAAAATAGTTGTAT 48803 || || || ||||| || |||||| || Sbjct 342118 AAGGTCTTGAAACCGAAGTAGTTGAAT 342144 >seq5 Length=1351988 Score = 156 bits (172), Expect = 5e-33 Identities = 417/631 (66%), Gaps = 25/631 (4%) Strand=Plus/Minus Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 |||||||| |||| ||||| || | |||||| | ||| || ||||| ||||| | Sbjct 97084 GACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATCCGGAATCCATAGAGCATAA 97025 Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302 ||||| || | | || | |||||| || || |||| || | |||| | ||||| Sbjct 97024 AATAAGTCTCGGGCCCTCATTTCTTCTTTTCCGTGATTCTTTCTTAGTTGTAAGAAGTCA 96965 Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362 || ||||| ||||||||||||| || ||||| | |||| || ||||| || || Sbjct 96964 ATAATATCCCCATGCCATGGTTCCAAGTATATACAAAAGGCACCAGGGCGTTTGTTCCCA 96905 Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422 |||||||| | |||||| || || |||||| |||| | | ||| || || | ||||||| Sbjct 96904 CCTTGATCGACATATCTTGCTGTGTTGTTAAAAACCCGCAGCATAGGAACTAAACCATTT 96845 Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTAATTGAAA 48480 || ||||||| | || || |||||| ||| | || |||||||| || || | Sbjct 96844 GAAGTACCATTCGACCCTGAGATATAAGCACCATTTGCCCTTATATTTGACACAT--GTA 96787 Query 48481 TACCTATACCACC---TGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAA 48536 | || |||||||| |||| || ||||| | |||| | || ||| || | |||| Sbjct 96786 TTCCAATACCACCAGATGCC---TTTGATATCAAAGCAGTCTTGTGTAA-AGTCTTATAA 96731 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || || || ||| || ||| |||| | ||||| || |||| | ||| Sbjct 96730 ATACCATCAATAGAGTCTTCTTCCATAGCCACAAGAAAGCATGATGACAAATATTGATTT 96671 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || ||| || || || || || || |||||||| | || | ||| | ||| Sbjct 96670 ACTGTACCGCTATTGAACAAAGTAGGTGAAGCGTGAATAAAATACTTTTGTGACATTAAT 96611 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGA--------TGTATACCTATAGATA 48708 | || || |||| || | |||||||| |||| | || ||| | | || | Sbjct 96610 TGGTAAGTCTCAAGTACTGCATCTATAT--CATTAAATGGTCCGTGAATAGCAAGAGCAA 96553 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATT---TTGTTATTTATTTTCAAAAGAT 48765 | | ||| |||||| | || || ||||| | || | || ||| | |||| | || Sbjct 96552 CTCTCATGAACATAAACTGCGGAGTTTCATAAGTTTCCTCATTGTTTCTCTTCATCAAAT 96493 Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 |||| || | ||| || |||||||||| Sbjct 96492 ATGACTTACAAAGTGTCTTCCAACCAAAATA 96462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108736762760