Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 172 1e-37 seq7 122 2e-22 seq4 111 4e-19 seq8 93.3 1e-13 seq6 91.5 3e-13 >seq5 Length=1351988 Score = 172 bits (190), Expect = 1e-37 Identities = 332/484 (69%), Gaps = 7/484 (1%) Strand=Plus/Plus Query 110514 TTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCT 110573 ||| | || ||||||||| | | || | || || |||||||| ||||||||| | || Sbjct 96681 TTGTCATCATGCTTTCTTGTGGCTATGGAAGAAGACTCTATTGATGGTATTTATAAGACT 96740 Query 110574 CTTAAAGAA-ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT-TCATG 110631 ||| | || |||||| | || || || ||||| || ||||| || || || ||| Sbjct 96741 -TTACACAAGACTGCTTTGATATCAAAGGCATCTGGTGGTATTGGAATACATGTGTCAA- 96798 Query 110632 ATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 |||| | |||| || || ||||| || |||| ||| |||||| ||| | |||| Sbjct 96799 ATATAAGGGCAAATGGTGCTTATATCTCAGGGTCGAATGGTACTTCAAATGGTTTAGTTC 96858 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA-- 110749 | ||| | | || || ||| |||| |||| |||||| |||||||||| || | | Sbjct 96859 CTATGCTGCGGGTTTTTAACAACACAGCAAGATATGTCGATCAAGGTGGGAACAAACGCC 96918 Query 110750 -TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 ||| | ||| ||| || | ||||| |||||| ||||| |||| |||||| ||| Sbjct 96919 CTGGTGCCTTTTGTATATACTTGGAACCATGGCATGGGGATATTATTGACTTCTTACAAC 96978 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 | | || ||||| ||| |||||| || || || || ||||||||||| | |||| Sbjct 96979 TAAGAAAGAATCACGGAAAAGAAGAAATGAGGGCCCGAGACTTATTTTATGCTCTATGGA 97038 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 || | ||| | || ||| |||||||| || | |||| ||||| || | |||| Sbjct 97039 TTCCGGATCTTTTTATGCAACGTGTTGAAAATAATGAAGATTGGTCCATTTTTAGTCCAG 97098 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 || | | ||| ||||||| ||||| | |||||| || ||| || ||||| | Sbjct 97099 ATGAAGCAACAGGTTTATCTGACTGCTATGGTACAGAGTTCAAAACCCTATATGAAAAGT 97158 Query 110989 ATGA 110992 |||| Sbjct 97159 ATGA 97162 >seq7 Length=940253 Score = 122 bits (134), Expect = 2e-22 Identities = 383/590 (65%), Gaps = 5/590 (1%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| || |||||||| || | |||||| |||| || || | |||| || || | Sbjct 342139 ACTACTTCGGTTTCAAGACCTTGGAACGTTCTTACTTGCTAAGAATCAACGGTAAGGTTG 342080 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||||||||||||||||| | | | || || | ||||| || || |||||| Sbjct 342079 CTGAACGTCCTCAACACATGATCATGAGAGTGGCTGTCGGTATCCACGGTAGAGATATTG 342020 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCT 110480 || ||| | ||| ||| | || | | || || | | | || ||| | || Sbjct 342019 AAAAGGTTTTGGAAACTTACAACCTAATGTCTCTAA-GATACTTCACACACGCTTCGCCA 341961 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || || || || || || ||| | |||| || | || || || || | | || Sbjct 341960 ACACTTTTCAATGCTGGTACTCCTCATCCACAAATGTCATCATGTTTCCTAGTGGCCATG 341901 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || ||||| |||||||||||||| || || | || ||| ||| | || ||||| Sbjct 341900 AAGGAAGATTCCATTGAAGGTATTTACGACACTTTGAAGGAATGTGCCATGATCTCTAAG 341841 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | |||| || |||||| | ||| |||| | ||||| || | || | | || || Sbjct 341840 ACCGCTGGTGGTATTGGTTTGCACATTCACAACATTCGTTCTACCGGTTCTTACATTGCT 341781 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || ||| |||| | || || |||||||| | | || |||||| ||||||| Sbjct 341780 GGTACTAACGGTACTTCTAACGGTATTATTCCAATGATTCGTGTTTTCAACAACACTGCT 341721 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 || || | ||||||||| |||||| ||| | || || | || |||| || Sbjct 341720 CGTTACGTTGACCAAGGTGGTAACAAGAGACCTGGTGCCTTCGCCTTGTACATCGAGCCA 341661 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| |||||||| || || ||| | || | | || || || || |||||| Sbjct 341660 TGGCACTCAGATATCTTCGACTTCGTCGACATCAGAAAGAACCACGGTAAGGAAGAAATC 341601 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAA 110887 | ||| | || || || ||| | ||||| ||||| | |||||||| Sbjct 341600 CGTGCAAGAGACTTGTTCCCAGCACTATGGATCCCAGATCTTTTCATGAA 341551 >seq4 Length=1422013 Score = 111 bits (122), Expect = 4e-19 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 167642 ATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCATTCATCGTAAAAACC 167701 |||||||||| | ||||||||||| || || |||| ||| ||||| || ||||| || Sbjct 1350863 ATCGATGAAAGTCTTCCAGATTTTGATATTACACCGTCTTTTACATTCGTCATAAAAGCC 1350922 Query 167702 ATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAAAATTATGTTATTTNN 167761 || |||| | | || ||||||||| ||||| ||||| || | || | ||| | | Sbjct 1350923 GTAAACTCTCGTAACATTAGCACATTCATGATTCCCTCTCAAAAGAAAAAAGTTCTCTGG 1350982 Query 167762 NNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTTAACACCTCTATC 167821 | || |||| | | || ||||||||||||||||| ||||||||| Sbjct 1350983 ATATTTGATCTTATAACAAAGAAGAAGCAGAATTGTTTCTAATGATTGCTTACCTCTATC 1351042 Query 167822 AACATAATCACCTAAAAATATATATTT 167848 || || ||||||||||||| ||| || Sbjct 1351043 CACGTAGTCACCTAAAAATAGATAATT 1351069 >seq8 Length=945852 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 ||||||||| || | ||||| || |||||| || | ||| |||| | ||| Sbjct 479682 TCTATTCCTTCCGTATTAGATGGGTTAAAACCTGGTCAAAGAAAGGTTATCTATGCCTGT 479623 Query 279917 TTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAA 279976 || || ||||| || | ||||| |||||||| ||| ||||||||||| ||| Sbjct 479622 TTTAAGAGAAATTTAAAATCAGAAATCAAGGTTGCTCAACTAGGTGGTTATGTTTCTGAA 479563 Query 279977 CATGCAGGTTATCATCACGGTGAAGCGTCTCT---TCAAGGTGCTATTGTAGGTCTTGCC 280033 ||| | || || |||||||||||||| || || |||| | ||||| ||| | ||| Sbjct 479562 CATACCGGATACCATCACGGTGAAGCTTCCCTATATCAAA---CGATTGTTGGTTTAGCC 479506 Query 280034 CAAGATTTTATGGCTTCAAACAA 280056 ||||||||| | | ||| ||||| Sbjct 479505 CAAGATTTTGTTGGTTCTAACAA 479483 >seq6 Length=1212614 Score = 91.5 bits (100), Expect = 3e-13 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 305317 TGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGC 305376 ||| |||||| ||| | |||||| | |||||||| || || || |||||||||||||| Sbjct 1097660 TGATAATGATCCCGTTTTATTCAATCGTCAACCATCCCTTCACAAGATGTCTATGATGGC 1097719 Query 305377 TCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTGCTTGTACG 305434 || | ||| || || ||| | | ||| || || | ||||| | || | | Sbjct 1097720 ACACAGAGTTAAGGT--TATGCCGTATTCTACCTTCAGGCTAAATTTGTCTGTTACATCC 1097777 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||| ||||||||||| || ||||||||| | || || || ||||| Sbjct 1097778 CCTTATAATGCAGATTTTGATGGTGACGAAATGAATTTACACGTTCCACAATC 1097830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812663145649