Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 170 5e-37 seq5 165 2e-35 seq2 158 3e-33 seq9 100 7e-16 seq7 91.5 4e-13 >seq3 Length=1564943 Score = 170 bits (188), Expect = 5e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| | ||| || |||||||| ||||||| ||||| || | ||||||||| Sbjct 1518418 AGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTA 1518477 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||| Sbjct 1518478 CCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCC 1518537 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| ||| ||| || |||||||| || | ||| || || || ||| Sbjct 1518538 TTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCGACTTCCAAAGTG 1518597 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| || ||||| || || | ||| Sbjct 1518598 ATGGTCTTACCAGTCAAGGTCTTGACGAA 1518626 >seq5 Length=1351988 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| ||||||| ||||| || | ||||||||| || Sbjct 1201227 TCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 1201168 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 1201167 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 1201108 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || |||||||| || | ||| || || || || || Sbjct 1201107 GTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAAT 1201048 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | |||||| Sbjct 1201047 AGTCTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1201012 >seq2 Length=1688883 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| ||| | |||||| |||||||| ||||||| ||||| |||| | |||||| || Sbjct 908654 CTCAAGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGATAGAGTTCTTCCG 908595 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||||| || || || || || || | || ||||||||| || ||||||||||| || Sbjct 908594 TCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCTTTA 908535 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| ||||| ||||||| || || ||||| || | ||| || || || ||||| Sbjct 908534 TCTTGAATCTTAGACTTCACATTATCAATAGTGTCAGAAGATTCGACTTCCAAAGTGATA 908475 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 908474 GTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 908440 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| ||||| | ||||| |||| | |||||| || Sbjct 908427 TCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCGGATAGAGTTCTTCC 908368 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || ||||| || || | || ||||||||| || |||||||||||||| Sbjct 908367 GTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 908308 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| |||||| || || ||||| || | ||| || || || ||||| Sbjct 908307 GTCTTGAATCTTAGATTTCACATTGTCAATAGTGTCAGAAGATTCGACTTCCAAAGTGAT 908248 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 908247 AGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 908212 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| ||||| | ||||| || | | |||||| || Sbjct 908199 TCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGATAGAGTTCTTCC 908140 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || || | || ||||||||| || |||||||||||||| Sbjct 908139 GTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 908080 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||||||| || || ||||| || | ||| || || || ||||| Sbjct 908079 GTCTTGAATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCGACTTCCAAAGTGAT 908020 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 908019 AGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 907984 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || || ||||| ||||| | ||||| || | | |||||| || Sbjct 907971 TCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCAGATAGAGTTCTTCC 907912 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || || || | || ||||||||| || |||||||||||||| Sbjct 907911 GTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 907852 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||||||| || || ||||| || | ||| || || || ||||| Sbjct 907851 ATCTTGGATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 907792 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | || | ||||||||| Sbjct 907791 GGTCTTACCTGTTAACGTCTTGACAAAGATTTGCATTTT 907753 >seq9 Length=46256 Score = 100 bits (110), Expect = 7e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 7498 ATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTT 7557 ||||| || ||||| ||||||||||| ||| |||| |||| || ||| ||| | Sbjct 12162 ATTATTAGATTAGAGTTAGCTGCTCCCGGTAATCAAGTATTAGCCGGAAATCATCAATTG 12221 Query 7558 TACAACGTTATTATTA-CGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGT 7616 | ||||| | ||| || | ||| ||| | | ||||||||||| || || ||||| | Sbjct 12222 TTCAACG-TCTTAGTAGTTGGGCACGCCGTATTGATGATTTTCTTCTTAGTAATGCCCGC 12280 Query 7617 TATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 | || || ||||| || || | || | ||||||||||||||||| | |||||| | Sbjct 12281 ATTAATTGGAGGTTTTGGTAACTATTTATTACCTTTAATGATTGGTGCATCAGATATGTC 12340 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 |||| | || | |||||||| || |||| |||| ||| | ||| Sbjct 12341 TTTTGCTAGATTAAACAATATTTCATTCTGATGTTTACCACCTGCTTTA 12389 >seq7 Length=940253 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || ||||| || || || |||||||| ||||||||||| Sbjct 270267 GAAAATTTGACCATCGGTAATGGAAATAACGTTGGTTGGAATATAAGCGGAAACATCACC 270208 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||||| || || || || || | || |||||||| Sbjct 270207 ACCTTGGGTTTCGATGACTGGCAAAGCGGTCAAAGAACCACCACC 270163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531062486246