Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001417835.1_202014-10- 03] 9 sequences; 10,895,581 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 138 8e-28 seq3 116 3e-21 seq2 111 1e-19 >seq5 Length=1351988 Score = 138 bits (152), Expect = 8e-28 Identities = 172/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| |||||| |||| |||||| || ||||||||||||||||| || | Sbjct 1201238 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAC 1201179 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| | | || |||| ||||| || ||||||||||| | || || |||| || Sbjct 1201178 AAAGTT--CTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAG 1201121 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | ||||||||| || ||||| ||| || ||| | |||||||||| ||||| Sbjct 1201120 GAATACCTTCCTTGTCTTGGATCTTAGACTTGACATTGT--CAATGGTGTCGGAAGATTC 1201063 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||| ||||| ||||| || || |||||||| ||||| ||||||||| Sbjct 1201062 GACTTCCAAGGTAATAGTCTTACCAGTTAGGGTCTTGACGAAAATTTGCATG 1201011 >seq3 Length=1564943 Score = 116 bits (128), Expect = 3e-21 Identities = 163/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || ||||| |||||||| |||| |||||| ||| ||||||||||||||||| || Sbjct 1518406 ATACCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 1518465 Query 44168 GCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | ||| | |||| |||| ||||| || ||||||||||| | || || |||| Sbjct 1518466 GACAAAGTT--CTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTG 1518523 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 || | ||||||||| || ||||| ||| || ||| | |||||||| | || Sbjct 1518524 GTGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGT--CAATGGTGTCAGAAGA 1518581 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||| || |||| || || ||||| || || | |||||| ||||| Sbjct 1518582 TTCGACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTGACGAA 1518626 >seq2 Length=1688883 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||||| ||||| |||| ||| || ||| ||||||||||||||||| |||| Sbjct 908666 CCTCCTCTCAACCTCAAGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGAT 908607 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | |||| || | || || || ||||| ||||| | || || |||| || Sbjct 908606 AGAGTT--CTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAG 908549 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | |||||| || || ||||| ||||| | | || ||||| | ||||| | Sbjct 908548 GAATACCTTCTTTATCTTGAATCTTAGACTTCACATTATCAATAGTGTCAGAAGATTCGA 908489 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || ||||| || || | ||||| |||||||||||||| Sbjct 908488 CTTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 908440 Score = 109 bits (120), Expect = 4e-19 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | |||||| || |||||||| |||||||| Sbjct 908217 TTGCATACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTA 908158 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || | || || || ||||| ||||| | || || Sbjct 908157 GTCAGATAGAGTT--CTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGG 908100 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| ||| | ||||||||| || ||||| ||||| | | || ||||| | Sbjct 908099 TCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTCACATTGTCAATAGTGTCAGAA 908040 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||| || || ||||| || || | ||||| |||||||||||||| Sbjct 908039 GATTCGACTTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 907984 Score = 109 bits (120), Expect = 4e-19 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | |||||| || |||||||| |||||||| Sbjct 908445 TTGCATACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTA 908386 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | |||| || | || || || ||||| ||||| | || || Sbjct 908385 GTCGGATAGAGTT--CTTCCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGG 908328 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| ||| | ||||||||| || ||||| |||| | | || ||||| | Sbjct 908327 TCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGATTTCACATTGTCAATAGTGTCAGAA 908268 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||| || || ||||| || || | ||||| |||||||||||||| Sbjct 908267 GATTCGACTTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 908212 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | |||||| || |||||||| |||||||| Sbjct 907989 TTGCATACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTA 907930 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || | || || || ||||| ||||| | || || Sbjct 907929 GTCAGATAGAGTT--CTTCCGTCTTCTAATTGTTTACCCGCAAAAATCAATCTTTGTTGG 907872 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| ||| | ||||||||| || ||||| ||||| | | || ||||| | Sbjct 907871 TCTGGAGGAATACCTTCCTTATCTTGGATCTTAGACTTCACATTGTCAATAGTGTCAGAA 907812 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||| || || ||||| || || | ||||| || ||||||||||| Sbjct 907811 GATTCAACTTCCAAAGTGATGGTCTTACCTGTTAACGTCTTGACAAAGATTTGCAT 907756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990360513553