Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001466335.1_202015-12-
14] 100 sequences; 10,711,999 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 3e-20
seq86 105 1e-17
seq88 89.7 1e-12
>seq1
Length=4213555
Score = 114 bits (126), Expect = 3e-20
Identities = 297/445 (67%), Gaps = 17/445 (4%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||| || ||||| || ||||| | || || |||| | || || |||| ||||||
Sbjct 1143939 GTTGCGTTCGCTGCCGTGGAAGGTGTGTTTTTCTCTGGTTCCTTTGCTGCCATCTTCTGG 1143880
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| | |||| | |||| ||| | |||| ||| || || || |||| || ||
Sbjct 1143879 TTGAAGAAGAAGGGTTTGATGCCAGGTTTGACCTTCTCAAACGAATTGATTTGCAGAGAT 1143820
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|||||| | || ||||||||| || |||| || | | |||| || | |
Sbjct 1143819 GAAGGTTTGCACACCGACTTTGCCTGTTTGCTATTCCATCA----TTTGAAGAA---CAA 1143767
Query 102098 TCAAGAGA-AAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153
| ||| || |||| | |||| | |||| ||||| || || ||| |||| |
Sbjct 1143766 GCCAGATCCAAAGATTGTCGAAAGAATCATCACAGAAGCTGTTGAGATCGAA-AAGAGAT 1143708
Query 102154 TCT-CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
|| || | | || || ||| || |||| |||||| | ||||||| ||| |
Sbjct 1143707 ACTTCATCGACGCTCTACCCGTTTCTCTATTGGGTATGAACGCTGATTTGATGAACCAAT 1143648
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAA 102270
|| | |||||||| ||||| | |||| |||||| | || || ||||| |||| ||
Sbjct 1143647 ACGTCGAATTTGTTGCAGACAGACTACTGGTTGCTTTAGGTAACAAGAAAT--ACTACAA 1143590
Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330
|| || ||||| ||| || ||||| || |||||| | | ||| ||||| || ||
Sbjct 1143589 CGTCACTAACCCATTCGACTTTATGGAAAACATTTCCTTGGCCGGTAAAACCAATTTCTT 1143530
Query 102331 TGAAAAGAGAGTCGCCGAGTATCAA 102355
||||||||||| | || || |||
Sbjct 1143529 CGAAAAGAGAGTGTCAGACTACCAA 1143505
Score = 89.7 bits (98), Expect = 1e-12
Identities = 182/268 (68%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833
|||| ||| | || | || ||||| ||||| ||||| || || ||||| | |||
Sbjct 3210313 TGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTG 3210372
Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893
|| |||||||| |||||| ||| || | | | ||| ||||| || || || | |||
Sbjct 3210373 TCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGT 3210432
Query 94894 GGTGTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952
|| ||| || ||| ||| || ||||| || ||||| || || || || ||
Sbjct 3210433 GGA-TGAGGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGA 3210491
Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012
||| || | || ||||| | || || || ||| ||||| || |||||||||||
Sbjct 3210492 CATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCAC 3210551
Query 95013 ACGCATAATCATGTCCTGAGGGCGCTCA 95040
| ||| ||||||| ||||| || |||
Sbjct 3210552 TCTCATGATCATGTGTTGAGGACGTTCA 3210579
>seq86
Length=766785
Score = 105 bits (116), Expect = 1e-17
Identities = 167/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443
|||||| ||||| ||||||||||| || || || ||||||||| | ||||| || ||
Sbjct 578665 GATAGACGTGAGGGTGATTTGGGACCAGTTTATGGGTTCCAATGGAGACATTTCGGAGCA 578724
Query 35444 GAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATA 35503
||||| | || ||| |||||| | ||| | ||| ||||||| || | || |
Sbjct 578725 GAATACAAGACATGTGACGATGATTATTCGGGACAAGGTGTTGATCAGTTAAGCGATGTG 578784
Query 35504 CTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562
| | | ||| |||| ||||| | ||||||||||| |||||| | |||||||| ||
Sbjct 578785 ATTCATAAGTTGA-AGAACAATCCTTACGATAGAAGGATTATTATGTCAGCATGGAACCC 578843
Query 35563 TATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
| ||| | | ||||||||||| |||||||| || |||| || |||||
Sbjct 578844 TCCTGATTTCCCAAAAATGGCTCTTCCACCATGCCATGTGTTCTCTCAGTTCTATGT 578900
>seq88
Length=341902
Score = 89.7 bits (98), Expect = 1e-12
Identities = 182/268 (68%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833
|||| ||| | || | || ||||| ||||| ||||| || || ||||| | |||
Sbjct 13368 TGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTG 13309
Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893
|| |||||||| |||||| ||| || | | | ||| ||||| || || || | |||
Sbjct 13308 TCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGT 13249
Query 94894 GGTGTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952
|| ||| || ||| ||| || ||||| || ||||| || || || || ||
Sbjct 13248 GGA-TGAGGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGA 13190
Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012
||| || | || ||||| | || || || ||| ||||| || |||||||||||
Sbjct 13189 CATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCAC 13130
Query 95013 ACGCATAATCATGTCCTGAGGGCGCTCA 95040
| ||| ||||||| ||||| || |||
Sbjct 13129 TCTCATGATCATGTGTTGAGGACGTTCA 13102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989582732095500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |