Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001466335.1_202015-12- 14] 100 sequences; 10,711,999 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 seq86 105 1e-17 seq88 89.7 1e-12 >seq1 Length=4213555 Score = 114 bits (126), Expect = 3e-20 Identities = 297/445 (67%), Gaps = 17/445 (4%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || ||||| || ||||| | || || |||| | || || |||| |||||| Sbjct 1143939 GTTGCGTTCGCTGCCGTGGAAGGTGTGTTTTTCTCTGGTTCCTTTGCTGCCATCTTCTGG 1143880 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | |||| | |||| ||| | |||| ||| || || || |||| || || Sbjct 1143879 TTGAAGAAGAAGGGTTTGATGCCAGGTTTGACCTTCTCAAACGAATTGATTTGCAGAGAT 1143820 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||| || |||| || | | |||| || | | Sbjct 1143819 GAAGGTTTGCACACCGACTTTGCCTGTTTGCTATTCCATCA----TTTGAAGAA---CAA 1143767 Query 102098 TCAAGAGA-AAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || |||| | |||| | |||| ||||| || || ||| |||| | Sbjct 1143766 GCCAGATCCAAAGATTGTCGAAAGAATCATCACAGAAGCTGTTGAGATCGAA-AAGAGAT 1143708 Query 102154 TCT-CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 || || | | || || ||| || |||| |||||| | ||||||| ||| | Sbjct 1143707 ACTTCATCGACGCTCTACCCGTTTCTCTATTGGGTATGAACGCTGATTTGATGAACCAAT 1143648 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAA 102270 || | |||||||| ||||| | |||| |||||| | || || ||||| |||| || Sbjct 1143647 ACGTCGAATTTGTTGCAGACAGACTACTGGTTGCTTTAGGTAACAAGAAAT--ACTACAA 1143590 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 || || ||||| ||| || ||||| || |||||| | | ||| ||||| || || Sbjct 1143589 CGTCACTAACCCATTCGACTTTATGGAAAACATTTCCTTGGCCGGTAAAACCAATTTCTT 1143530 Query 102331 TGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 1143529 CGAAAAGAGAGTGTCAGACTACCAA 1143505 Score = 89.7 bits (98), Expect = 1e-12 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| ||| | || | || ||||| ||||| ||||| || || ||||| | ||| Sbjct 3210313 TGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTG 3210372 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 || |||||||| |||||| ||| || | | | ||| ||||| || || || | ||| Sbjct 3210373 TCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGT 3210432 Query 94894 GGTGTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 || ||| || ||| ||| || ||||| || ||||| || || || || || Sbjct 3210433 GGA-TGAGGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGA 3210491 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| || | || ||||| | || || || ||| ||||| || ||||||||||| Sbjct 3210492 CATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCAC 3210551 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTCA 95040 | ||| ||||||| ||||| || ||| Sbjct 3210552 TCTCATGATCATGTGTTGAGGACGTTCA 3210579 >seq86 Length=766785 Score = 105 bits (116), Expect = 1e-17 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443 |||||| ||||| ||||||||||| || || || ||||||||| | ||||| || || Sbjct 578665 GATAGACGTGAGGGTGATTTGGGACCAGTTTATGGGTTCCAATGGAGACATTTCGGAGCA 578724 Query 35444 GAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATA 35503 ||||| | || ||| |||||| | ||| | ||| ||||||| || | || | Sbjct 578725 GAATACAAGACATGTGACGATGATTATTCGGGACAAGGTGTTGATCAGTTAAGCGATGTG 578784 Query 35504 CTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 | | | ||| |||| ||||| | ||||||||||| |||||| | |||||||| || Sbjct 578785 ATTCATAAGTTGA-AGAACAATCCTTACGATAGAAGGATTATTATGTCAGCATGGAACCC 578843 Query 35563 TATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | ||| | | ||||||||||| |||||||| || |||| || ||||| Sbjct 578844 TCCTGATTTCCCAAAAATGGCTCTTCCACCATGCCATGTGTTCTCTCAGTTCTATGT 578900 >seq88 Length=341902 Score = 89.7 bits (98), Expect = 1e-12 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| ||| | || | || ||||| ||||| ||||| || || ||||| | ||| Sbjct 13368 TGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTG 13309 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 || |||||||| |||||| ||| || | | | ||| ||||| || || || | ||| Sbjct 13308 TCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGT 13249 Query 94894 GGTGTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 || ||| || ||| ||| || ||||| || ||||| || || || || || Sbjct 13248 GGA-TGAGGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGA 13190 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| || | || ||||| | || || || ||| ||||| || ||||||||||| Sbjct 13189 CATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCAC 13130 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTCA 95040 | ||| ||||||| ||||| || ||| Sbjct 13129 TCTCATGATCATGTGTTGAGGACGTTCA 13102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582732095500