Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001466335.1_202015-12- 14] 100 sequences; 10,711,999 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 176 1e-38 seq91 140 7e-28 >seq1 Length=4213555 Score = 176 bits (194), Expect = 1e-38 Identities = 371/546 (68%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA-CTTAATAGATTG 268812 |||| || ||||||||||||| |||||| | ||| |||| | || ||| || || || Sbjct 1144329 GCCGAGGCCTCTTTTTGGACTGCTGAAGAAATCGATTTGTCCAAGGATCTTCAT-GACTG 1144271 Query 268813 GAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| || || ||| |||| || ||| || || || | |||||||| ||||| Sbjct 1144270 GAACAACAGAATGAACGAGAACGAGAGATTTTTCATCTCCAGAGTGCTTGCGTTCTTTGC 1144211 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||||||||||| |||||||| | || || || |||| | ||||| || || Sbjct 1144210 TGCTTCCGATGGTATCGTGAACGAAAACTTGGTGGAAAACTTCTCTGCTGAGGTGCAAAT 1144151 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| ||||||| ||||| ||||| ||||| || || ||||| || || || || | Sbjct 1144150 TCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATCCACTCCGAAAC 1144091 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 || | || || || ||||| || | ||| || ||| | || | || Sbjct 1144090 TTATTCGTTGTTGATTGACACTTACATCAAGGATCCTAAGGAACACGAATTCTTGTTGAA 1144031 Query 269050 TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | | || ||| || | | | |||| || ||||||| | | |||||| Sbjct 1144030 TGCCATTGAAACCATTCCACAAATCAAAGAAAAGGCTCAATGGGCCATTAGATGGATTCG 1143971 Query 269110 CGATAGCGCG--CCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 ||| || ||| |||| ||||| || ||||| || || || || |||||| | || Sbjct 1143970 TGATGACGAAGCCCTATACGCTGAAAGATTGGTTGCGTTCGCTGCCGTGGAAGGTGTGTT 1143911 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || ||||| || ||||| ||||||||||| | || | |||||||| || Sbjct 1143910 TTTCTCTGGTTCCTTTGCTGCCATCTTCTGGTTGAAGAAGAAGGGTTTGATGCCAGGTTT 1143851 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || ||||| ||||||||||| |||| || |||||||| ||| |||||| || ||||| Sbjct 1143850 GACCTTCTCAAACGAATTGATTTGCAGAGATGAAGGTTTGCACACCGACTTTGCCTGTTT 1143791 Query 269287 ATTATT 269292 |||| Sbjct 1143790 GCTATT 1143785 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | || | || | || ||||| || || || || |||||| Sbjct 45483 ATACCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 45424 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||||||||| | ||| || |||||||| || | || ||||| || || Sbjct 45423 GACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 45364 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | || ||||| || | ||| || || ||| Sbjct 45363 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCG 45304 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 45303 ACTTCCAAAGTGATGGTCTTACCAGT 45278 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||| | || | || | ||| ||||| || || || || ||||| ||| Sbjct 1810893 CCTCCTCTCAACCTCAAGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGAT 1810952 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| |||||||||| ||| || ||||||||||| | || ||||| || ||||| Sbjct 1810953 AGAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGGA 1811012 Query 104453 ATTCCTTC 104460 || ||||| Sbjct 1811013 ATACCTTC 1811020 >seq91 Length=167622 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | ||||||||| ||||| | ||| || ||| Sbjct 23316 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCA 23257 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || ||||| || ||||| || || || ||||| | || Sbjct 23256 GCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTAGACTTG 23197 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || | ||||||||||||||||| || || Sbjct 23196 ACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATAGTCTTACCAGTTAGGGTC 23137 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 23136 TTGACGAAAATTTGCAT 23120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396924770800