Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001466335.1_202015-12- 14] 100 sequences; 10,711,999 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq91 136 6e-27 >seq1 Length=4213555 Score = 185 bits (204), Expect = 1e-41 Identities = 552/841 (66%), Gaps = 20/841 (2%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| ||| ||| | || ||||||||||| || || || |||| || || Sbjct 1143499 AGCCTTTTGGTAGTCTGACACTCTCTTTTCGAAGAAATTGGTTTTACCGGCCAAGGAAAT 1143558 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977 | |||||| || ||||| |||||| || || ||||| ||||| ||| | Sbjct 1143559 GTTTTCCATAAAGTCGAATGGGTTAGTGACGTTGTAGTATTT--CTTGTTACCTAAAGCA 1143616 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 | || ||| ||||| ||||||||||| ||||| ||||||||| |||||||| Sbjct 1143617 ACCAGTAGTCTGTCTGCAACAAATTCGACGTATTGGTTCATCAAATCAGCGTTCATACCC 1143676 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCT 18094 | ||| |||| |||||||| || || || | ||||| || |||||||||| || Sbjct 1143677 AATAG--AGAAACGGGTAGAGCGTCGATGAAGTATCTCTTT-TCGATCTCAACAG---CT 1143730 Query 18095 TTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154 | | | ||| || || | | ||||| | || | | || || ||| Sbjct 1143731 TCTGTGATGATTCTTTCGACAATCTTTGGATCTGGCTTGTTCTTCAAATGATGGAATAGC 1143790 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||| || ||||| ||||||||||||||| | || |||||||| || || Sbjct 1143791 AAACAGGCAAAGTCGGTGTGCAAACCTTCATCTCTGCAAATCAATTCGTTTGAGAAGGTC 1143850 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | ||| | || || | ||| || || | || || || ||| || Sbjct 1143851 AAACCTGGCATCAAACCCTTCTTCTTCAACCAGAAGATGGCAGCAAAGGAACCAGAGAAA 1143910 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || | ||| || ||| |||||||| | ||||||||||| | | || | || Sbjct 1143911 AACACACCTTCCACGGCAGCGAACGCAACCAATCTTTCAGC-GTATAGGGCTTCGTCATC 1143969 Query 18335 A-GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | | |||||| | ||||||| | | || || || | || || || Sbjct 1143970 ACGAATCCATCTAATGGCCCATTGAGCCTTTTCTTTGATTTGTGGAATGGTTTCAATGGC 1144029 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| ||||| || | ||| || | ||| || || |||||||| || ||||| ||||| Sbjct 1144030 ATTCAACAAGAATTCGTGTTCCTTAGGATCCTTGATGTAAGTGTCAATCAACAACGAATA 1144089 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||| || || ||| ||||||| || || |||| || || | | || || || Sbjct 1144090 AGTTTCGGAGTGGATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGG 1144149 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||| | ||| | | || |||| ||||| || || || || ||||| || | || Sbjct 1144150 AATTTGCACCTCAGCAGAGAAGTTTTCCACCAAGTTTTCGTTCACGATACCATCGGAAGC 1144209 Query 18574 TGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629 || || || || | || | | | |||||| | | || || || || | |||| Sbjct 1144210 AGCAAAGAACGCAAGCAC-TCTGGAGATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGT 1144268 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 |||| |||| | ||| || || | ||| | |||||| | ||||||||||| | |||| Sbjct 1144269 TCCAGTCATGAAGATCCTTGGACAAATCGATTTCTTCAGCAGTCCAAAAAGAGGCCTCGG 1144328 Query 18690 C 18690 | Sbjct 1144329 C 1144329 Score = 116 bits (128), Expect = 5e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || || |||||||| || || || || || ||||||||| |||||| | ||| || Sbjct 45269 AAGACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCTGACACCATTGACAAT 45328 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || || || || ||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 45329 GTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAAAGATTGATCTTT 45388 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGG 156015 || |||||||| | ||||| |||||||| || || || | | ||||||| || Sbjct 45389 GCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCTGACTACA--ACATCCAAAAGGAAT 45446 Query 156016 CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || ||||| || || || ||| ||||||| ||| Sbjct 45447 CCACCCTTCACTTGGTCTTGAGACTAAGAGGTGGT 45481 >seq91 Length=167622 Score = 136 bits (150), Expect = 6e-27 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| || |||||||| || ||||||||| ||| Sbjct 23120 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAGACTATTACCTTGGAAGTCGAATCTTCC 23179 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| || ||||| || |||||||| ||| Sbjct 23180 GACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 23239 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| |||||||| | |||||| |||||||| || || || | Sbjct 23240 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTACA-- 23297 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | ||||||| || | || ||||| || || || ||||| ||||| |||| Sbjct 23298 ACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTG 23348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871085160000