Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001466335.1_202015-12- 14] 100 sequences; 10,711,999 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 176 9e-39 seq91 172 1e-37 >seq1 Length=4213555 Score = 176 bits (194), Expect = 9e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | || || ||||| || || ||||| || || || || || |||| Sbjct 45482 TACCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAG 45423 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||||||| | ||| || ||||||||||| | ||||||||| ||||| | Sbjct 45422 ACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTG 45363 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| | || ||||| ||||| || ||| || ||| | Sbjct 45362 GAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCGA 45303 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| || || Sbjct 45302 CTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTGACGAA 45263 Score = 131 bits (144), Expect = 3e-25 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||||||| | || || ||||| || || ||||| || || || || || || || Sbjct 1810892 ACCTCCTCTCAACCTCAAGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCGGA 1810951 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| |||| |||||||||| ||| || |||||||| || | ||||||||| |||||||| Sbjct 1810952 TAGAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGG 1811011 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| || ||| || ||| || Sbjct 1811012 AATACCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATAGTGTCAGAAGATTCGAC 1811071 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || ||||| |||||||| ||||| || || || ||||| Sbjct 1811072 TTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 1811119 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | || ||||| ||||| || ||| || ||| ||||||||||| || ||||| Sbjct 1811940 ATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTA 1811999 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 ||||| |||||||| ||||| || |||||| ||| Sbjct 1812000 CCTGTTAACGTCTTGACAAAGATTTGCATTTTTA 1812033 >seq91 Length=167622 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| || |||||||| || || || || || ||||| Sbjct 23347 ACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGA 23288 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| |||||||| Sbjct 23287 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGG 23228 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || || || ||| || Sbjct 23227 AATACCTTCCTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGAC 23168 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| || || | ||||| || || || ||||| Sbjct 23167 TTCCAAGGTAATAGTCTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 23120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825942033900