Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001466335.1_202015-12- 14] 100 sequences; 10,711,999 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq83 172 1e-37 seq88 127 5e-24 seq1 127 5e-24 seq99 111 4e-19 seq81 96.9 8e-15 seq80 91.5 3e-13 >seq83 Length=768430 Score = 172 bits (190), Expect = 1e-37 Identities = 332/484 (69%), Gaps = 7/484 (1%) Strand=Plus/Plus Query 110514 TTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCT 110573 ||| | || ||||||||| | | || | || || |||||||| ||||||||| | || Sbjct 95577 TTGTCATCATGCTTTCTTGTGGCTATGGAAGAAGACTCTATTGATGGTATTTATAAGACT 95636 Query 110574 CTTAAAGAA-ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT-TCATG 110631 ||| | || |||||| | || || || ||||| || ||||| || || || ||| Sbjct 95637 -TTACACAAGACTGCTTTGATATCAAAGGCATCTGGTGGTATTGGAATACATGTGTCAA- 95694 Query 110632 ATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 |||| | |||| || || ||||| || |||| ||| |||||| ||| | |||| Sbjct 95695 ATATAAGGGCAAATGGTGCTTATATCTCAGGGTCGAATGGTACTTCAAATGGTTTAGTTC 95754 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA-- 110749 | ||| | | || || ||| |||| |||| |||||| |||||||||| || | | Sbjct 95755 CTATGCTGCGGGTTTTTAACAACACAGCAAGATATGTCGATCAAGGTGGGAACAAACGCC 95814 Query 110750 -TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 ||| | ||| ||| || | ||||| |||||| ||||| |||| |||||| ||| Sbjct 95815 CTGGTGCCTTTTGTATATACTTGGAACCATGGCATGGGGATATTATTGACTTCTTACAAC 95874 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 | | || ||||| ||| |||||| || || || || ||||||||||| | |||| Sbjct 95875 TAAGAAAGAATCACGGAAAAGAAGAAATGAGGGCCCGAGACTTATTTTATGCTCTATGGA 95934 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 || | ||| | || ||| |||||||| || | |||| ||||| || | |||| Sbjct 95935 TTCCGGATCTTTTTATGCAACGTGTTGAAAATAATGAAGATTGGTCCATTTTTAGTCCAG 95994 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 || | | ||| ||||||| ||||| | |||||| || ||| || ||||| | Sbjct 95995 ATGAAGCAACAGGTTTATCTGACTGCTATGGTACAGAGTTCAAAACCCTATATGAAAAGT 96054 Query 110989 ATGA 110992 |||| Sbjct 96055 ATGA 96058 >seq88 Length=341902 Score = 127 bits (140), Expect = 5e-24 Identities = 384/590 (65%), Gaps = 5/590 (1%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| || |||||||| || | |||||| |||| || || | |||| || || | Sbjct 13041 ACTACTTCGGTTTCAAGACCTTGGAACGTTCTTACTTGCTAAGAATCAACGGTAAGGTTG 13100 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||||||||||||||||| | | | || || | ||||| || || |||||| Sbjct 13101 CTGAACGTCCTCAACACATGATCATGAGAGTGGCTGTCGGTATCCACGGTAGAGATATTG 13160 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCT 110480 || ||| | ||| ||| | || | | || || | | | || ||| | ||| Sbjct 13161 AAAAGGTTTTGGAAACTTACAACCTAATGTCTCTAA-GATACTTCACACACGCTTCGCCT 13219 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || || || || || || ||| | |||| || | || || || || | | || Sbjct 13220 ACACTTTTCAATGCTGGTACTCCTCATCCACAAATGTCATCATGTTTCCTAGTGGCCATG 13279 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || ||||| |||||||||||||| || || | || ||| ||| | || ||||| Sbjct 13280 AAGGAAGATTCCATTGAAGGTATTTACGACACTTTGAAGGAATGTGCCATGATCTCTAAG 13339 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | |||| || |||||| | ||| |||| | ||||| || | || | | || || Sbjct 13340 ACCGCTGGTGGTATTGGTTTGCACATTCACAACATTCGTTCTACCGGTTCTTACATTGCT 13399 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || ||| |||| | || || |||||||| | | || |||||| ||||||| Sbjct 13400 GGTACTAACGGTACTTCTAACGGTATTATTCCAATGATTCGTGTTTTCAACAACACTGCC 13459 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 || || | ||||||||| |||||| ||| | || || | || |||| || Sbjct 13460 CGTTACGTTGACCAAGGTGGTAACAAGAGACCTGGTGCCTTCGCCTTGTACATCGAGCCA 13519 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| |||||||| || || ||| | || | | || || || || |||||| Sbjct 13520 TGGCACTCAGATATCTTCGACTTCGTCGACATCAGAAAGAACCACGGTAAGGAAGAAATC 13579 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAA 110887 | ||| | || || || ||| | ||||| ||||| | |||||||| Sbjct 13580 CGTGCAAGAGACTTGTTCCCAGCACTATGGATCCCAGATCTTTTCATGAA 13629 >seq1 Length=4213555 Score = 127 bits (140), Expect = 5e-24 Identities = 384/590 (65%), Gaps = 5/590 (1%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| || |||||||| || | |||||| |||| || || | |||| || || | Sbjct 3210640 ACTACTTCGGTTTCAAGACCTTGGAACGTTCTTACTTGCTAAGAATCAACGGTAAGGTTG 3210581 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||||||||||||||||| | | | || || | ||||| || || |||||| Sbjct 3210580 CTGAACGTCCTCAACACATGATCATGAGAGTGGCTGTCGGTATCCACGGTAGAGATATTG 3210521 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCT 110480 || ||| | ||| ||| | || | | || || | | | || ||| | ||| Sbjct 3210520 AAAAGGTTTTGGAAACTTACAACCTAATGTCTCTAA-GATACTTCACACACGCTTCGCCT 3210462 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || || || || || || ||| | |||| || | || || || || | | || Sbjct 3210461 ACACTTTTCAATGCTGGTACTCCTCATCCACAAATGTCATCATGTTTCCTAGTGGCCATG 3210402 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || ||||| |||||||||||||| || || | || ||| ||| | || ||||| Sbjct 3210401 AAGGAAGATTCCATTGAAGGTATTTACGACACTTTGAAGGAATGTGCCATGATCTCTAAG 3210342 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | |||| || |||||| | ||| |||| | ||||| || | || | | || || Sbjct 3210341 ACCGCTGGTGGTATTGGTTTGCACATTCACAACATTCGTTCTACCGGTTCTTACATTGCT 3210282 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || ||| |||| | || || |||||||| | | || |||||| ||||||| Sbjct 3210281 GGTACTAACGGTACTTCTAACGGTATTATTCCAATGATTCGTGTTTTCAACAACACTGCC 3210222 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 || || | ||||||||| |||||| ||| | || || | || |||| || Sbjct 3210221 CGTTACGTTGACCAAGGTGGTAACAAGAGACCTGGTGCCTTCGCCTTGTACATCGAGCCA 3210162 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| |||||||| || || ||| | || | | || || || || |||||| Sbjct 3210161 TGGCACTCAGATATCTTCGACTTCGTCGACATCAGAAAGAACCACGGTAAGGAAGAAATC 3210102 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAA 110887 | ||| | || || || ||| | ||||| ||||| | |||||||| Sbjct 3210101 CGTGCAAGAGACTTGTTCCCAGCACTATGGATCCCAGATCTTTTCATGAA 3210052 >seq99 Length=875967 Score = 111 bits (122), Expect = 4e-19 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 167642 ATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCATTCATCGTAAAAACC 167701 |||||||||| | ||||||||||| || || |||| ||| ||||| || ||||| || Sbjct 68136 ATCGATGAAAGTCTTCCAGATTTTGATATTACACCGTCTTTTACATTCGTCATAAAAGCC 68077 Query 167702 ATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAAAATTATGTTATTTNN 167761 || |||| | | || ||||||||| ||||| ||||| || | || | ||| | | Sbjct 68076 GTAAACTCTCGTAACATTAGCACATTCATGATTCCCTCTCAAAAGAAAAAAGTTCTCTGG 68017 Query 167762 NNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTTAACACCTCTATC 167821 | || |||| | | || ||||||||||||||||| ||||||||| Sbjct 68016 ATATTTGATCTTATAACAAAGAAGAAGCAGAATTGTTTCTAATGATTGCTTACCTCTATC 67957 Query 167822 AACATAATCACCTAAAAATATATATTT 167848 || || ||||||||||||| ||| || Sbjct 67956 CACGTAGTCACCTAAAAATAGATAATT 67930 >seq81 Length=391803 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 ||||||||| || | ||||| || |||||| || | ||| |||| | ||| Sbjct 187999 TCTATTCCTTCCGTATTAGATGGGTTAAAACCTGGTCAAAGAAAGGTTATCTATGCCTGT 188058 Query 279917 TTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAA 279976 || || ||||| || | ||||| |||||||| ||| ||||||||||| ||| Sbjct 188059 TTTAAGAGAAATTTAAAATCAGAAATCAAGGTTGCTCAACTAGGTGGTTATGTTTCTGAA 188118 Query 279977 CATGCAGGTTATCATCACGGTGAAGCGTCTCT---TCAAGGTGCTATTGTAGGTCTTGCC 280033 ||| | || ||||||||||||||||| || || |||| | ||||| ||| | ||| Sbjct 188119 CATACCGGATATCATCACGGTGAAGCTTCCCTATATCAA---ACGATTGTTGGTTTAGCC 188175 Query 280034 CAAGATTTTATGGCTTCAAACAA 280056 ||||||||| | | ||| ||||| Sbjct 188176 CAAGATTTTGTTGGTTCTAACAA 188198 >seq80 Length=309313 Score = 91.5 bits (100), Expect = 3e-13 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 305317 TGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGC 305376 ||| |||||| ||| | |||||| | |||||||| || || || |||||||||||||| Sbjct 105491 TGATAATGATCCCGTTTTATTCAATCGTCAACCATCCCTTCACAAGATGTCTATGATGGC 105432 Query 305377 TCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTGCTTGTACG 305434 || | ||| || || ||| | | ||| || || | ||||| | || | | Sbjct 105431 ACACAGAGTTAAGGT--TATGCCGTATTCTACCTTCAGGCTAAATTTGTCTGTTACATCC 105374 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||| ||||||||||| || ||||||||| | || || || ||||| Sbjct 105373 CCTTATAATGCAGATTTTGATGGTGACGAAATGAATTTACACGTTCCACAATC 105321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811279396100