Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001660455.1_202016-06- 09] 84 sequences; 11,537,868 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 284 2e-71 seq3 196 6e-45 seq5 127 3e-24 >seq7 Length=951660 Score = 284 bits (314), Expect = 2e-71 Identities = 751/1141 (66%), Gaps = 18/1141 (2%) Strand=Plus/Plus Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 |||||||||| || || || | |||||||||||| |||||||| |||||||| || || | Sbjct 336989 ACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAAGCATCCTTGTATAGCA 337048 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 ||||||| ||||||||||| | |||| ||| | || || | ||| | | |||||| Sbjct 337049 TGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTACCACAACTTTTGAGCCT 337108 Query 63139 TTATTATAGATTTGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTC 63196 | | | ||| || | | | |||||| ||||| | |||||| ||| || || Sbjct 337109 TGACAGTC--TTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTACAATGCTTCAAATTC 337166 Query 63197 GTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCC 63256 || || |||||| || | || ||| | ||| | | ||| | ||| ||| | Sbjct 337167 ATCACCGTAAACATCTGGTAAGCCTGGTGCTTCGTTTGGAGAGAACAAAGTCCAATCTTC 337226 Query 63257 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63316 || | || |||| ||||| || ||||| || ||||| || ||| || | ||||| Sbjct 337227 GTTCTTCTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTGCTGGGAACAAGTCTCT 337286 Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376 || | ||| || || || |||||| | | |||| ||| | | ||||| || Sbjct 337287 TGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGAAGTCGAAGATATCTGA 337346 Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436 ||||| || || | ||| | ||| | | ||||| | ||||| || || || || | Sbjct 337347 GTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGTTACCACCTTGGTCAAC 337406 Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63496 ||| | ||| ||||| || |||| | | |||||||||||||||||| || |||| || Sbjct 337407 GTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCGTTAGAAGTACCGTT 337466 Query 63497 GGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556 ||||| | || || || | | |||||| || ||| | ||| || || || Sbjct 337467 AGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGTGCAAACCAATACCACC 337526 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 || | |||||||| | || ||| || || ||||| || || ||||| ||| ||| Sbjct 337527 AGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAAATACCTTCAATGGAATC 337586 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 || ||||| | ||| ||||| |||||||| || ||| ||| || ||||| || Sbjct 337587 TTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGAGGAGTACCAGCATTGAA 337646 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 | || || |||||||| || || || || ||| | ||| ||||| || || | | | Sbjct 337647 AAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGGTTGTAAGTTTCCAAAAC 337706 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || ||||| | || || || || || || | ||| | |||||| ||||| | Sbjct 337707 CTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATGATCATGTGTTGAGGACG 337766 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 |||| ||| || ||| ||| | | |||||| || |||||| || || ||||| || Sbjct 337767 TTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCCAAGGTCTTGAAACCGAA 337826 Query 63857 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 |||||| || || |||| ||||| | ||| | || || | |||| ||| Sbjct 337827 GTAGTTGAATTGGAAATCTCTGTCGTAGACAATCGCAGAGTTCAAAGTATC------TTT 337880 Query 63917 GTTAACTATATCCATGGTA-ATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTT 63970 ||| | || | ||| | | || | ||||| || || || || | ||| | || Sbjct 337881 GTTCTCCATGACGATGTCATACACCTCATCCGAAATCATAGGCGAGTGAATACCAGTCTT 337940 Query 63971 AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 64030 || || || | || | || || || | ||||| ||| | || | |||| ||| Sbjct 337941 TGGGTTGACCCATCTGTACAAGTCTTCGACCACTTGCGAAAACTGCTTCGTGGTTTGCTT 338000 Query 64031 GTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGT 64090 ||| | || || ||||| ||||| ||||| | | | || ||||| || || || || Sbjct 338001 GTGCAAGTTAGAAATGGCAATTCTAGCGGCCAAAGTAGCGTAATCTGGGTGAATGGTGGT 338060 Query 64091 ACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTAT 64149 || || ||| | |||| || |||| | || ||||| || || ||||| || | || Sbjct 338061 -CATGTAGGCACATGTTTCAGCAGCCAAGTTATCTAATTCAACAGTCGTTACACCTTCAT 338119 Query 64150 A 64150 | Sbjct 338120 A 338120 >seq3 Length=1617349 Score = 196 bits (216), Expect = 6e-45 Identities = 582/889 (65%), Gaps = 28/889 (3%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| || ||| | |||||||| ||||| ||||| || |||| || || ||| Sbjct 421728 TTTTGGTAGTCTGACACTCTCTTTTCGAAGAAATTGGTTTTACCGGCCAAGGAAATGTTT 421669 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| || || || || || || || ||||| ||| || || || || | Sbjct 421668 TCCATAAAGTCGAATGGGTTAGTGACGTTGTAGTATTTCTTGTTACCTAAAGCAACCAGT 421609 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | ||| ||||| || ||||| | ||| ||||||| ||| ||||| || | || Sbjct 421608 AGTCTGTCTGCAACAAATTCGACGTATTGGTTCATCAAATCAGCGTTCATACCCAATAGA 421549 Query 33471 TTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 ||| || ||||| | | ||| | |||| ||| || || || | ||| || || Sbjct 421548 GAAACGGGTAGAGCGTCGATGAAGTATCTCTT-TTCGATCTCAACAGCTTCTGTGATGAT 421490 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGAT-------GTAAT--AAATGTTTAAACATCAA 33580 ||| ||| || || ||||| || | ||||| | || | ||| Sbjct 421489 ---TCT------TTCGACAATCTTTGGATCTGGCTTGTTCTTCAAATGATGGAATAGCAA 421439 Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||||| || || ||||| | ||| |||||||| || || || | Sbjct 421438 ACAGGCAAAGTCGGTGTGCAAGCCTTCATCTCTGCAAATCAATTCGTTTGAGAAGGTCAA 421379 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| | || ||| || | ||| || |||| |||||| || || || || || Sbjct 421378 ACCTGGCATCAAACCCTTCTTCTTCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAAAA 421319 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---G 33757 | ||||| || ||||| || |||| | ||| || | || ||| ||||| | Sbjct 421318 CACACCTTCCACGGCAGCGAACGCAACCAATCTTTCAGCGTATAGGGCTTCGTCATCACG 421259 Query 33758 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| || || ||||| | ||||| | ||| | || || ||||| ||||||| Sbjct 421258 AATCCATCTAATG-GCCCATTGAGCCTTTTCTTTGATTTGTGGAATGGTTTCAATGGCAT 421200 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 | || | ||| | ||| ||| ||| || | ||||| || ||||| | ||| Sbjct 421199 TCAACAAGAAGTCGTGTTCCTTAGGATCCTTGATGTAAGTGTCAATCAACAACGAATAAG 421140 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 |||| || || |||||||| || || || || ||||||||||| | || || | || Sbjct 421139 TTTCGGAGTGGATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGAA 421080 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 | ||||| || | | | || ||| | || ||||| ||||| || ||||| || | Sbjct 421079 TTTGCACCTCAGCAGAGAAGTTTTCCACCAAGTTTTCGTTCACGATACCATCGGAAGCAG 421020 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTTAGTTTATTCC 34053 |||| ||||| | || || ||| || | ||| ||| || || || |||| Sbjct 421019 CAAAGAACGCAAGCACTCTGGAGATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGTTCC 420960 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | |||| | ||| || || | ||| | |||||| | |||||||| || ||||| || Sbjct 420959 AGTCATGAAGATCCTTGGACAAATCGATTTCTTCAGCAGTCCAAAAAGAGGCCTCGGCTC 420900 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||||| | |||||| || || || | ||||||||||| ||||| Sbjct 420899 TCTTATAAGCCTCCCAGATTTCGTGGTACTTGATTGGGAAAAGCACAAA 420851 >seq5 Length=1432259 Score = 127 bits (140), Expect = 3e-24 Identities = 190/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || | |||||| ||||| |||||||| | ||| ||||| |||| | || | Sbjct 99808 ACACGCTGCATAAAAAGATCCGGAATCCATAAAGCATAAAATAAGTCTCGGGCCCTCATT 99749 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || ||||| ||||||| | || | | ||| | |||||||| |||||| ||| Sbjct 99748 TCTTCTTTTCCGTGATTCTTTCTTAGTTGTAAGAAGTCAATAATATCCCCATGCCATGGT 99689 Query 63387 TCCAAGTATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63444 ||||||||||| || || | ||||| |||||||| || || ||||| | ||||| | Sbjct 99688 TCCAAGTATAT--ACAAAAGGCACCAGGGCGTTTGTTCCCACCTTGATCGACATATCTGG 99631 Query 63445 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 | ||||| ||| |||| | || ||| |||| | ||| || || ||||||| | || | Sbjct 99630 CTGTGTTGTTAAAAACCCGCAGCATAGGAACTAAACCATTAGAAGTACCATTCGACCCTG 99571 Query 63505 AGATATAGCCTCCACTGGCACGAATATT 63532 ||||||| | ||| | || | ||||| Sbjct 99570 AGATATAAGCACCATTTGCCCTTATATT 99543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816938691520