Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001660455.1_202016-06- 09] 84 sequences; 11,537,868 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 163 7e-35 seq5 140 7e-28 >seq3 Length=1617349 Score = 163 bits (180), Expect = 7e-35 Identities = 368/546 (67%), Gaps = 8/546 (1%) Strand=Plus/Plus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA-CTTAATAGATTG 268812 |||| || ||||||||||||| |||||| | ||| |||| | || ||| || || || Sbjct 420902 GCCGAGGCCTCTTTTTGGACTGCTGAAGAAATCGATTTGTCCAAGGATCTTCAT-GACTG 420960 Query 268813 GAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| || || ||| |||| || ||| || || || | |||||||| ||||| Sbjct 420961 GAACAACAGAATGAACGAGAACGAGAGATTTTTCATCTCCAGAGTGCTTGCGTTCTTTGC 421020 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||||||||||| |||||||| | || || || |||| | ||||| || || Sbjct 421021 TGCTTCCGATGGTATCGTGAACGAAAACTTGGTGGAAAACTTCTCTGCTGAGGTGCAAAT 421080 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| ||||||| ||||| ||||| ||||| || || ||||| || || || || | Sbjct 421081 TCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATCCACTCCGAAAC 421140 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 || | || || || ||||| || | ||| || ||| | | | || Sbjct 421141 TTATTCGTTGTTGATTGACACTTACATCAAGGATCCTAAGGAACACGACTTCTTGTTGAA 421200 Query 269050 TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | | || ||| || | | | |||| || ||||||| | | |||||| Sbjct 421201 TGCCATTGAAACCATTCCACAAATCAAAGAAAAGGCTCAATGGGCCATTAGATGGATTCG 421260 Query 269110 CGATAGCGCG--CCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 ||| || ||| |||| ||||| || ||||| || || || || |||||| | || Sbjct 421261 TGATGACGAAGCCCTATACGCTGAAAGATTGGTTGCGTTCGCTGCCGTGGAAGGTGTGTT 421320 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || || || || ||||| ||||||||||| | || | |||||||| || Sbjct 421321 TTTCTCTGGTTCCTTCGCTGCCATCTTCTGGTTGAAGAAGAAGGGTTTGATGCCAGGTTT 421380 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || ||||| ||||||||||| |||| || ||||| || ||| |||||| || ||||| Sbjct 421381 GACCTTCTCAAACGAATTGATTTGCAGAGATGAAGGCTTGCACACCGACTTTGCCTGTTT 421440 Query 269287 ATTATT 269292 |||| Sbjct 421441 GCTATT 421446 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | || | || | || ||||| || || || || |||||| Sbjct 1562983 ATACCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 1563042 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||||||||| | ||| || |||||||| || | || ||||| || || Sbjct 1563043 GACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 1563102 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | || ||||| || | ||| || || ||| Sbjct 1563103 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCG 1563162 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 1563163 ACTTCCAAAGTGATGGTCTTACCAGT 1563188 >seq5 Length=1432259 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | ||||||||| ||||| | ||| || ||| Sbjct 1264072 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCA 1264013 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || ||||| || ||||| || || || ||||| | || Sbjct 1264012 GCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTAGACTTG 1263953 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || | ||||||||||||||||| || || Sbjct 1263952 ACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATAGTCTTACCAGTTAGGGTC 1263893 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1263892 TTGACGAAAATTTGCAT 1263876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397160807472