Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001660455.1_202016-06- 09] 84 sequences; 11,537,868 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 seq5 136 6e-27 >seq3 Length=1617349 Score = 185 bits (204), Expect = 1e-41 Identities = 552/841 (66%), Gaps = 20/841 (2%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| ||| ||| | || ||||||||||| || || || |||| || || Sbjct 421732 AGCCTTTTGGTAGTCTGACACTCTCTTTTCGAAGAAATTGGTTTTACCGGCCAAGGAAAT 421673 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977 | |||||| || ||||| |||||| || || ||||| ||||| ||| | Sbjct 421672 GTTTTCCATAAAGTCGAATGGGTTAGTGACGTTGTAGTATTT--CTTGTTACCTAAAGCA 421615 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 | || ||| ||||| ||||||||||| ||||| ||||||||| |||||||| Sbjct 421614 ACCAGTAGTCTGTCTGCAACAAATTCGACGTATTGGTTCATCAAATCAGCGTTCATACCC 421555 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCT 18094 | ||| |||| |||||||| || || || | ||||| || |||||||||| || Sbjct 421554 AATAG--AGAAACGGGTAGAGCGTCGATGAAGTATCTCTTT-TCGATCTCAACAG---CT 421501 Query 18095 TTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154 | | | ||| || || | | ||||| | || | | || || ||| Sbjct 421500 TCTGTGATGATTCTTTCGACAATCTTTGGATCTGGCTTGTTCTTCAAATGATGGAATAGC 421441 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||| || ||||| || |||||||||||| | || |||||||| || || Sbjct 421440 AAACAGGCAAAGTCGGTGTGCAAGCCTTCATCTCTGCAAATCAATTCGTTTGAGAAGGTC 421381 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | ||| | || || | ||| || || | ||||| || ||| || Sbjct 421380 AAACCTGGCATCAAACCCTTCTTCTTCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAA 421321 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || | ||| || ||| |||||||| | ||||||||||| | | || | || Sbjct 421320 AACACACCTTCCACGGCAGCGAACGCAACCAATCTTTCAGC-GTATAGGGCTTCGTCATC 421262 Query 18335 A-GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | | |||||| | ||||||| | | || || || | || || || Sbjct 421261 ACGAATCCATCTAATGGCCCATTGAGCCTTTTCTTTGATTTGTGGAATGGTTTCAATGGC 421202 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| ||||| || | ||| || | ||| || || |||||||| || ||||| ||||| Sbjct 421201 ATTCAACAAGAAGTCGTGTTCCTTAGGATCCTTGATGTAAGTGTCAATCAACAACGAATA 421142 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||| || || ||| ||||||| || || |||| || || | | || || || Sbjct 421141 AGTTTCGGAGTGGATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGG 421082 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||| | ||| | | || |||| ||||| || || || || ||||| || | || Sbjct 421081 AATTTGCACCTCAGCAGAGAAGTTTTCCACCAAGTTTTCGTTCACGATACCATCGGAAGC 421022 Query 18574 TGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629 || || || || | || | | | |||||| | | || || || || | |||| Sbjct 421021 AGCAAAGAACGCAAGCAC-TCTGGAGATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGT 420963 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 |||| |||| | ||| || || | ||| | |||||| | ||||||||||| | |||| Sbjct 420962 TCCAGTCATGAAGATCCTTGGACAAATCGATTTCTTCAGCAGTCCAAAAAGAGGCCTCGG 420903 Query 18690 C 18690 | Sbjct 420902 C 420902 Score = 116 bits (128), Expect = 5e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || || |||||||| || || || || || ||||||||| |||||| | ||| || Sbjct 1563197 AAGACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCTGACACCATTGACAAT 1563138 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || || || || ||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 1563137 GTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAAAGATTGATCTTT 1563078 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGG 156015 || |||||||| | ||||| |||||||| || || || | | ||||||| || Sbjct 1563077 GCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCTGACTACA--ACATCCAAAAGGAAT 1563020 Query 156016 CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || ||||| || || || ||| ||||||| ||| Sbjct 1563019 CCACCCTTCACTTGGTCTTGAGACTAAGAGGTGGT 1562985 >seq5 Length=1432259 Score = 136 bits (150), Expect = 6e-27 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| || |||||||| || ||||||||| ||| Sbjct 1263876 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAGACTATTACCTTGGAAGTCGAATCTTCC 1263935 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| || ||||| || |||||||| ||| Sbjct 1263936 GACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 1263995 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| |||||||| | |||||| |||||||| || || || | Sbjct 1263996 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTACA-- 1264053 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | ||||||| || | || ||||| || || || ||||| ||||| |||| Sbjct 1264054 ACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTG 1264104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871231534400