Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001660455.1_202016-06-
09] 84 sequences; 11,537,868 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3 185 1e-41
seq5 136 6e-27
>seq3
Length=1617349
Score = 185 bits (204), Expect = 1e-41
Identities = 552/841 (66%), Gaps = 20/841 (2%)
Strand=Plus/Minus
Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919
||| |||| ||| ||| ||| | || ||||||||||| || || || |||| || ||
Sbjct 421732 AGCCTTTTGGTAGTCTGACACTCTCTTTTCGAAGAAATTGGTTTTACCGGCCAAGGAAAT 421673
Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977
| |||||| || ||||| |||||| || || ||||| ||||| ||| |
Sbjct 421672 GTTTTCCATAAAGTCGAATGGGTTAGTGACGTTGTAGTATTT--CTTGTTACCTAAAGCA 421615
Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037
| || ||| ||||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct 421614 ACCAGTAGTCTGTCTGCAACAAATTCGACGTATTGGTTCATCAAATCAGCGTTCATACCC 421555
Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCT 18094
| ||| |||| |||||||| || || || | ||||| || |||||||||| ||
Sbjct 421554 AATAG--AGAAACGGGTAGAGCGTCGATGAAGTATCTCTTT-TCGATCTCAACAG---CT 421501
Query 18095 TTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154
| | | ||| || || | | ||||| | || | | || || |||
Sbjct 421500 TCTGTGATGATTCTTTCGACAATCTTTGGATCTGGCTTGTTCTTCAAATGATGGAATAGC 421441
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
||||| ||||| || ||||| || |||||||||||| | || |||||||| || ||
Sbjct 421440 AAACAGGCAAAGTCGGTGTGCAAGCCTTCATCTCTGCAAATCAATTCGTTTGAGAAGGTC 421381
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
|| || ||||| | ||| | || || | ||| || || | ||||| || ||| ||
Sbjct 421380 AAACCTGGCATCAAACCCTTCTTCTTCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAA 421321
Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334
|| | ||| || ||| |||||||| | ||||||||||| | | || | ||
Sbjct 421320 AACACACCTTCCACGGCAGCGAACGCAACCAATCTTTCAGC-GTATAGGGCTTCGTCATC 421262
Query 18335 A-GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393
| | |||||| | ||||||| | | || || || | || || ||
Sbjct 421261 ACGAATCCATCTAATGGCCCATTGAGCCTTTTCTTTGATTTGTGGAATGGTTTCAATGGC 421202
Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453
||| ||||| || | ||| || | ||| || || |||||||| || ||||| |||||
Sbjct 421201 ATTCAACAAGAAGTCGTGTTCCTTAGGATCCTTGATGTAAGTGTCAATCAACAACGAATA 421142
Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513
|||| || || ||| ||||||| || || |||| || || | | || || ||
Sbjct 421141 AGTTTCGGAGTGGATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGG 421082
Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573
| ||| | ||| | | || |||| ||||| || || || || ||||| || | ||
Sbjct 421081 AATTTGCACCTCAGCAGAGAAGTTTTCCACCAAGTTTTCGTTCACGATACCATCGGAAGC 421022
Query 18574 TGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629
|| || || || | || | | | |||||| | | || || || || | ||||
Sbjct 421021 AGCAAAGAACGCAAGCAC-TCTGGAGATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGT 420963
Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689
|||| |||| | ||| || || | ||| | |||||| | ||||||||||| | ||||
Sbjct 420962 TCCAGTCATGAAGATCCTTGGACAAATCGATTTCTTCAGCAGTCCAAAAAGAGGCCTCGG 420903
Query 18690 C 18690
|
Sbjct 420902 C 420902
Score = 116 bits (128), Expect = 5e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897
|| || |||||||| || || || || || ||||||||| |||||| | ||| ||
Sbjct 1563197 AAGACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCTGACACCATTGACAAT 1563138
Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957
|| || || || ||||| || ||||| || || ||||| |||||||||||||| | |
Sbjct 1563137 GTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAAAGATTGATCTTT 1563078
Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGG 156015
|| |||||||| | ||||| |||||||| || || || | | ||||||| ||
Sbjct 1563077 GCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCTGACTACA--ACATCCAAAAGGAAT 1563020
Query 156016 CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| || ||||| || || || ||| ||||||| |||
Sbjct 1563019 CCACCCTTCACTTGGTCTTGAGACTAAGAGGTGGT 1562985
>seq5
Length=1432259
Score = 136 bits (150), Expect = 6e-27
Identities = 170/231 (74%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || | ||||| || |||||||| || ||||||||| |||
Sbjct 1263876 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAGACTATTACCTTGGAAGTCGAATCTTCC 1263935
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || ||| || ||||| || ||||| || |||||||| |||
Sbjct 1263936 GACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 1263995
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||| | ||| |||||||| | |||||| |||||||| || || || |
Sbjct 1263996 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTACA-- 1264053
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| ||||||| || | || ||||| || || || ||||| ||||| ||||
Sbjct 1264054 ACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTG 1264104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871231534400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |