Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001660455.1_202016-06- 09] 84 sequences; 11,537,868 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 161 3e-34 seq5 114 4e-20 seq6 104 7e-17 seq8 93.3 1e-13 >seq7 Length=951660 Score = 161 bits (178), Expect = 3e-34 Identities = 343/509 (67%), Gaps = 5/509 (1%) Strand=Plus/Plus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082 |||||| | |||| || || |||| |||||| ||||| || || || || || Sbjct 337353 TGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGTTACCACCTTGGTCAACGTAACG 337412 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| || ||||| |||| | ||| ||||||||||| || ||||| || || || || Sbjct 337413 AGCAGTGTTGTTGAAAACACGAATCATTGGAATAATACCGTTAGAAGTACCGTTAGTACC 337472 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| | ||||| | || |||| || ||||| || | ||||||||||| | Sbjct 337473 AGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGTGCAAACCAATACCACCAGCGGT 337532 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 ||||| || || |||||||| | ||| | | ||||||||||||| ||||| || | Sbjct 337533 CTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAAATACCTTCAATGGAATCTTCCTT 337592 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| | | ||| | || || | ||| || | || || ||||| ||||| ||||| Sbjct 337593 CATGGCCACTAGGAAACATGATGACATTTGTGGATGAGGAGTACCAGCATTGAAAAGTGT 337652 Query 156323 AGGTGTTGCATGAATAAAATA-CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCT 156381 || | || || | || || |||| |||||| | ||| || ||| || ||| | Sbjct 337653 TGGCGAAGCGTGTGTGAAGTATCTTA-GAGACATTAGGTTGTAAGTTTCCAAAACCTTTT 337711 Query 156382 CAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTA 156441 ||| || ||||| |||| || || || ||||| ||| || |||||||| || Sbjct 337712 CAATATCTCTACCGTGGATACCGACAGCCACTCTCATGATCATGTGTTGAGGACGTTCAG 337771 Query 156442 CAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAAT 156501 ||| | || | |||| || | ||| | ||||||| || || || ||||| || | Sbjct 337772 CAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCCAAGGTCTTGAAACCGAAGTAGT 337831 Query 156502 CAAACAGAAAATCACGGTTGTAATCAATC 156530 || | ||||| | || ||| ||||| Sbjct 337832 TGAATTGGAAATCTCTGTCGTAGACAATC 337860 Score = 109 bits (120), Expect = 2e-18 Identities = 333/502 (66%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || || || ||||||| | | ||||| || || | | ||| | ||| ||||| | Sbjct 641059 CTGTCGAATCTACCAGGTCTCATCAATGCGGGATCAAGAACATCAGGTCTATTTGTACCG 641000 Query 288910 GCCAATACAACAATA-GAT-TCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||||||| ||| || | | | || |||||||| ||||| ||||| Sbjct 640999 GCAAGAACAACAATTTGATCTCTGGAAG--TGAAACCATCCATCTCAACTAAAAGTTGAT 640942 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTC---TTGAATCACCCGAATCGCTCCttt 289024 | | || ||| |||||||| |||| ||||| ||| | |||| || ||| ||| Sbjct 640941 TCAAAGTGGCTTCTCTTTCATCGTTTGCACCTCCCATTGCACCACCTTT-TC-CTC-TTT 640885 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAG--AATTTTGTCTCGC 289082 ||||||| |||||| |||||||| | ||| || | || | || ||| || || Sbjct 640884 CCTTACCAATAGCATCGATTTCGTCCACGAAGATAATTGCTGGGGCTAACTTT--CTTGC 640827 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | | || || || | |||||||| || |||| ||||||| |||||||||||||||| Sbjct 640826 GTTCTCGAACAAATCACGAACACGGGAAGCACCAACACCAACAAACATTTCTACAAATTC 640767 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | || || | |||| ||| |||||| || || ||| | || | | Sbjct 640766 GGAACCTGACACAGACAAAAATGGAACACCTGCTTCACCGGCAGTTGCTTTTGCTAACAA 640707 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 || |||||||| || ||||| || ||| | | || |||| | || || |||| Sbjct 640706 AGTTTTACCTGTACCTGGTGGACCAGATAAAATTGCACCTCTTGGGATTTGAGCACCCAA 640647 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | || || ||||| || ||| ||| || | || | |||| || ||| ||||| Sbjct 640646 C-TTTTTGTACTTCTCTGGCTTCTGTAAGAAATGGACGAATTCCATAATTTCGCTTTTTG 640588 Query 289322 CCTCATCACATCCTGCTACATC 289343 | |||| ||| ||||| ||||| Sbjct 640587 CTTCATTACAACCTGCCACATC 640566 Score = 96.9 bits (106), Expect = 1e-14 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 ||||| |||| ||||| || || || || | || |||||| || || ||||| Sbjct 336916 ATAGAAGCCAAGTTACAAACAGCGGTTTCTTCTGGGTTAGAGTATTCAACGATTTCACAA 336975 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 |||| ||| ||| |||||| || || || ||||| || ||| || ||||||||||| Sbjct 336976 CACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAAGCA 337035 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 ||||||||||| ||| ||||||| || || || | || || |||| Sbjct 337036 TCCTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCA 337081 >seq5 Length=1432259 Score = 114 bits (126), Expect = 4e-20 Identities = 310/468 (66%), Gaps = 11/468 (2%) Strand=Plus/Minus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| |||||| | ||| ||| | |||||| || | ||| | ||| | Sbjct 99808 ACACGCTGCATAAAAAGATCCGGAATCCATAAAGCATAAAATAAGTCTCGGGCCCTCATT 99749 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | ||||||||||| | ||| | |||||| || |||||| ||| ||| Sbjct 99748 TCTTCTTTTCCGTGATTCTTTCTTAGTTGTAAGAAGTCAATAATATCCCCATGCCATGGT 99689 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 |||| || ||| ||| |||| | ||| ||||| ||||| ||||| | || Sbjct 99688 TCCAAGTATATACAAAAGGCACCAGGGCGTTTGTTCCCACCTTGATCGACATATCTGGCT 99629 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || || || || | |||||||||| | |||||| ||||| ||||| | || Sbjct 99628 GTGTTGTTAAAAACCCGCAGCATAGGAACTAAACCATTAGAAGTACCATTCGACCCTGAG 99569 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGA-ATATGTAGTCCAATACCACCTGACCATTT 156205 |||| | |||| || | | ||| ||| | ||||| |||||||||||| || || Sbjct 99568 ATATAAGCACCATTTGCCCTTATATT-TGACACATGTATTCCAATACCACCGGATGCCTT 99510 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || ||| | | || ||| || ||||||| |||||||| || |||||||| Sbjct 99509 TGATATCAAAGCAGTCTTGTGTAAAGTCTTATAAATACCATCAATAGAGTCTTCTTCCAT 99450 Query 156266 TGATAGTAGATAGCACGA--ACTTA-ATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 | | ||| |||| || || | ||||| | || | || ||||| | || Sbjct 99449 AGCCACAAGAAAGCATGATGACAAATATTGATTTACTG---TACCGCTATTGAACAAAGT 99393 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 ||||| || |||||||||||||| | ||||| | | ||| ||||| Sbjct 99392 AGGTGAAGCGTGAATAAAATACTTTTGTGACATTAATTGGTAAGTCTC 99345 >seq6 Length=1269051 Score = 104 bits (114), Expect = 7e-17 Identities = 222/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||| ||| || |||||| ||||| | | |||| ||||||||| || ||||| || || Sbjct 1156777 ATCGTAATGAACCATAATATCTTCTAAAGCTTTGACTAAACGACGTTGGATATACCCGGT 1156718 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | |||||| ||||| ||||| || | ||| ||||||||||||| |||||||| || Sbjct 1156717 TTCTGCTGTTTTCACAGCAGTATCGATCAAACCTTCACGACCACCCATCGCATGGAAAAA 1156658 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||||| || | | || | ||| || ||| | ||||||||||| | || | Sbjct 1156657 GAACTCTTGAGGAGTTAAACCTCTCAAGTAA-GAGTTTTCAACGAAACCCTTTGATTCTG 1156599 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | || | ||| ||| | || ||||| ||||| | | || | ||| | | |||| Sbjct 1156598 GAGAGTAGTCATCCTTAGAGAAATGTGGTAGGGTACGATCGGCAAACCCGAAAGCAATAC 1156539 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATC 302849 |||| || || || || || || | || | | ||| || | ||| || |||| Sbjct 1156538 GCTTACCTTCCACCGATTGTTGACCAACACAGGCAGACATTTGGGCAATGTTAATAAAGG 1156479 Query 302850 ACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| ||||| ||| | ||||| Sbjct 1156478 A--ACCCTTTGAGCCTGCACTGACCAT 1156454 >seq8 Length=997253 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199 |||||| ||||| ||||||| |||| || || ||||| || | ||| || || Sbjct 515073 TGTGAAGATATA--TCTCGGAGCAGCTGAATCTTTACCACCAGTAGCTCTGGTACCGAAA 515130 Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || || |||| || | | ||| |||||||| || || |||| ||| || | |||| Sbjct 515131 GCACCATTAGGCTTCAACAAGTAAATATTGTTAGAACCAACAAAATCTTGGGCTAAACCA 515190 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 ||||| | || || |||||||||||||| ||||| | |||||| |||||||| Sbjct 515191 ACAATCGTTTGATATAGGGAAGCTTCACCGTGATGGTATCCGGTATGTTCAGAAACATAA 515250 Query 60320 CCACTGAATTGTGCGACTTTAATTTCGGAGTGGAGTTTTTTCTTGAA 60366 |||| | ||| || || || ||||| || | | ||| |||| || Sbjct 515251 CCACCTAGTTGAGCAACCTTGATTTCTGATTTTAAATTTCTCTTAAA 515297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816015956308