Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001660455.1_202016-06- 09] 84 sequences; 11,537,868 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 154 3e-32 seq7 122 2e-22 seq4 105 2e-17 seq8 93.3 1e-13 seq6 86.0 1e-11 >seq5 Length=1432259 Score = 154 bits (170), Expect = 3e-32 Identities = 328/484 (68%), Gaps = 7/484 (1%) Strand=Plus/Plus Query 110514 TTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCT 110573 ||| | || ||||||||| | | || | || || |||||||| ||||||||| | || Sbjct 99426 TTGTCATCATGCTTTCTTGTGGCTATGGAAGAAGACTCTATTGATGGTATTTATAAGACT 99485 Query 110574 CTTAAAGAA-ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT-TCATG 110631 ||| | || |||||| | || || || || || || ||||| || || || ||| Sbjct 99486 -TTACACAAGACTGCTTTGATATCAAAGGCATCCGGTGGTATTGGAATACATGTGTCAA- 99543 Query 110632 ATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 |||| | |||| || || ||||| || |||| ||| |||| | ||| | |||| Sbjct 99544 ATATAAGGGCAAATGGTGCTTATATCTCAGGGTCGAATGGTACTTCTAATGGTTTAGTTC 99603 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA-- 110749 | ||| | | || || ||| |||| || | |||||| |||||||||| || | | Sbjct 99604 CTATGCTGCGGGTTTTTAACAACACAGCCAGATATGTCGATCAAGGTGGGAACAAACGCC 99663 Query 110750 -TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 ||| | ||| ||| || | ||||| |||||| ||||| |||| |||||| ||| Sbjct 99664 CTGGTGCCTTTTGTATATACTTGGAACCATGGCATGGGGATATTATTGACTTCTTACAAC 99723 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 | | || ||||| ||| |||||| || || || || ||||||||||| | |||| Sbjct 99724 TAAGAAAGAATCACGGAAAAGAAGAAATGAGGGCCCGAGACTTATTTTATGCTTTATGGA 99783 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 || | ||| | || ||| | |||||| || | |||| ||||| || | |||| Sbjct 99784 TTCCGGATCTTTTTATGCAGCGTGTTGAAAACAATGAAGATTGGTCCATTTTTAGTCCAG 99843 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 || | | ||| ||||||| ||||| | |||||| || ||| || ||||| | Sbjct 99844 ATGAAGCAACAGGTTTATCTGACTGCTATGGTACAGAGTTCAAAACCCTATATGAAAAGT 99903 Query 110989 ATGA 110992 |||| Sbjct 99904 ATGA 99907 >seq7 Length=951660 Score = 122 bits (134), Expect = 2e-22 Identities = 383/590 (65%), Gaps = 5/590 (1%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| || |||||||| || | |||||| |||| || || | |||| || || | Sbjct 337831 ACTACTTCGGTTTCAAGACCTTGGAACGTTCTTACTTGCTAAGAATCAACGGTAAGGTTG 337772 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||||||||||||||||| | | | || || | ||||| || || |||||| Sbjct 337771 CTGAACGTCCTCAACACATGATCATGAGAGTGGCTGTCGGTATCCACGGTAGAGATATTG 337712 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCT 110480 || ||| | ||| ||| | || | | || || | | | || ||| | || Sbjct 337711 AAAAGGTTTTGGAAACTTACAACCTAATGTCTCTAA-GATACTTCACACACGCTTCGCCA 337653 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || || || || || || ||| | |||| || | || || || || | | || Sbjct 337652 ACACTTTTCAATGCTGGTACTCCTCATCCACAAATGTCATCATGTTTCCTAGTGGCCATG 337593 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || ||||| |||||||||||||| || || | || ||| ||| | || ||||| Sbjct 337592 AAGGAAGATTCCATTGAAGGTATTTACGACACTTTGAAGGAATGTGCCATGATCTCTAAG 337533 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | |||| || |||||| | ||| |||| | ||||| || | || | | || || Sbjct 337532 ACCGCTGGTGGTATTGGTTTGCACATTCACAACATTCGTTCTACCGGTTCTTACATTGCT 337473 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || ||| |||| | || || |||||||| | | || |||||| ||||||| Sbjct 337472 GGTACTAACGGTACTTCTAACGGTATTATTCCAATGATTCGTGTTTTCAACAACACTGCT 337413 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 || || | ||||||||| |||||| ||| | || || | || |||| || Sbjct 337412 CGTTACGTTGACCAAGGTGGTAACAAGAGACCTGGTGCCTTCGCCTTGTACATCGAGCCA 337353 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| |||||||| || || ||| | || | | || || || || |||||| Sbjct 337352 TGGCACTCAGATATCTTCGACTTCGTCGACATCAGAAAGAACCACGGTAAGGAAGAAATC 337293 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAA 110887 | ||| | || || || ||| | ||||| ||||| | |||||||| Sbjct 337292 CGTGCAAGAGACTTGTTCCCAGCACTATGGATCCCAGATCTTTTCATGAA 337243 >seq4 Length=1474618 Score = 105 bits (116), Expect = 2e-17 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 167642 ATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCATTCATCGTAAAAACC 167701 |||||||||| | ||||||||||| || || |||| ||| ||||| || ||||| || Sbjct 1393862 ATCGATGAAAGTCTTCCAGATTTTGATATTACACCGTCTTTTACATTCGTCATAAAAGCC 1393921 Query 167702 ATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAAAATTATGTTATTTNN 167761 || |||| | | || ||||||||| ||||| ||||| || | || | ||| | | Sbjct 1393922 GTAAACTCTCGTAACATTAGCACATTCATGATTCCCTCTCAAAAGAAAAAAGTTCTCTGG 1393981 Query 167762 NNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTTAACACCTCTATC 167821 | || |||| | | || ||||||||| ||||||| ||||||||| Sbjct 1393982 ATATTTGATCTTATAACAAAGAAGAAGCAGAATTGTTTCCAATGATTGCTTACCTCTATC 1394041 Query 167822 AACATAATCACCTAAAAATATATATTT 167848 || || ||||||||||||| ||| || Sbjct 1394042 CACGTAGTCACCTAAAAATAGATAATT 1394068 >seq8 Length=997253 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 ||||||||| || | ||||| || |||||| || | ||| |||| | ||| Sbjct 515357 TCTATTCCTTCCGTATTAGATGGGTTAAAACCTGGTCAAAGAAAGGTTATCTATGCCTGT 515298 Query 279917 TTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAA 279976 || || ||||| || | ||||| |||||||| ||| ||||||||||| ||| Sbjct 515297 TTTAAGAGAAATTTAAAATCAGAAATCAAGGTTGCTCAACTAGGTGGTTATGTTTCTGAA 515238 Query 279977 CATGCAGGTTATCATCACGGTGAAGCGTCTCT---TCAAGGTGCTATTGTAGGTCTTGCC 280033 ||| | || || |||||||||||||| || || |||| | ||||| ||| | ||| Sbjct 515237 CATACCGGATACCATCACGGTGAAGCTTCCCTATATCAAA---CGATTGTTGGTTTAGCC 515181 Query 280034 CAAGATTTTATGGCTTCAAACAA 280056 ||||||||| | | ||| ||||| Sbjct 515180 CAAGATTTTGTTGGTTCTAACAA 515158 >seq6 Length=1269051 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 305317 TGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGC 305376 ||| |||||| ||| | |||||| | |||||||| || || || |||||||||||||| Sbjct 1155529 TGATAATGATCCCGTTTTATTCAATCGTCAACCATCCCTTCACAAGATGTCTATGATGGC 1155588 Query 305377 TCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACG 305434 || | ||| || | |||| | | ||| || || | ||||| | || | | Sbjct 1155589 ACACAGAGTTAAGG--TTATGCCGTATTCTACCTTCAGGCTAAATTTGTCTGTTACATCC 1155646 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||| |||||||| || || ||||||||| | || || || ||||| Sbjct 1155647 CCTTATAATGCAGATTTTGACGGTGACGAAATGAATTTACACGTTCCACAATC 1155699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811522692724