Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001692465.1_202016-07- 21] 1,096 sequences; 10,695,463 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq582 158 3e-33 seq493 140 7e-28 seq689 120 7e-22 >seq582 Length=15002 Score = 158 bits (174), Expect = 3e-33 Identities = 366/546 (67%), Gaps = 8/546 (1%) Strand=Plus/Plus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA-CTTAATAGATTG 268812 |||| || ||||||||||||| |||||| | ||| |||| | || || || || || Sbjct 1388 GCCGAGGCCTCTTTTTGGACTGCTGAAGAAATCGATTTGTCCAAGGATCTCCAT-GACTG 1446 Query 268813 GAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| || || ||| |||| || ||| || || || | |||||||| ||||| Sbjct 1447 GAACAACAGAATGAACGAGAACGAGAGATTTTTCATCTCCAGAGTGCTTGCGTTCTTTGC 1506 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||||||||||| |||||||| | || || || |||| ||||| || || Sbjct 1507 TGCTTCCGATGGTATCGTGAACGAAAACTTGGTGGAAAACTTCTCCGCTGAGGTGCAAAT 1566 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| ||||||| || || ||||| ||||| || || ||||| ||||| || |||| Sbjct 1567 TCCAGAAGCCAAGTGCTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCCGAGAC 1626 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 || | || || || ||||| || | ||| || || | | | || Sbjct 1627 TTATTCGTTGTTGATTGACACTTACATCAAGGATCCTAAGGAGCACGAGTTCTTGTTGAA 1686 Query 269050 TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA- 269108 | | || ||| || | | | |||| || ||||||| | | |||||| Sbjct 1687 TGCCATTGAAACCATTCCACAAATCAAAGAAAAGGCTCAATGGGCCATTAGATGGATTCG 1746 Query 269109 --ACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 |||| || | || | ||||| || ||||| || || || || |||||| | || Sbjct 1747 TGACGACGAAGCTCTATATGCTGAAAGATTGGTTGCGTTCGCTGCCGTGGAAGGTGTGTT 1806 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || || || || ||||| ||||||||||| | || | |||||||| || Sbjct 1807 TTTCTCTGGTTCCTTCGCTGCCATCTTCTGGTTGAAGAAGAAGGGTTTGATGCCAGGTTT 1866 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || ||||| ||||||||||| |||| || |||||||| ||| |||||| || ||||| Sbjct 1867 GACATTCTCAAACGAATTGATTTGCAGAGATGAAGGTTTGCACACCGACTTTGCCTGTTT 1926 Query 269287 ATTATT 269292 | |||| Sbjct 1927 ACTATT 1932 >seq493 Length=23338 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | ||||||||| ||||| | ||| || ||| Sbjct 23322 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCA 23263 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || ||||| || ||||| || || || ||||| | || Sbjct 23262 GCAAAGATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTAGACTTG 23203 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || | ||||||||||||||||| || || Sbjct 23202 ACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAGGTAATAGTCTTACCAGTTAGGGTC 23143 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 23142 TTGACGAAAATTTGCAT 23126 >seq689 Length=43288 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | || | || | || ||||| || || || || |||||| Sbjct 11457 ATACCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 11398 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||||||||| | ||| || |||||||| || | || ||||| || || Sbjct 11397 GACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 11338 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | || ||||| || | ||| || || ||| Sbjct 11337 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCG 11278 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 11277 ACTTCCAAAGTGATGGTCTTACCAGT 11252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151382231487968