Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001692465.1_202016-07-
21] 1,096 sequences; 10,695,463 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq65 179 4e-40
seq35 140 4e-28
>seq65
Length=9430
Score = 179 bits (198), Expect = 4e-40
Identities = 598/927 (65%), Gaps = 6/927 (1%)
Strand=Plus/Plus
Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939
|| ||||| || | ||||| ||||| || | ||| |||| |||| | ||||||
Sbjct 6922 GCAATAGAAGCCAAGTTACAGACAGCGGTTTCCTCTGGGTTAGAGTATTCGACGATTTCA 6981
Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999
||| | || | | |||||||||||||| || | |||||| | ||||||||
Sbjct 6982 CAACACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAA 7041
Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059
|| || ||||| ||||| || || || |||||||| | |||| ||| | ||||| | |
Sbjct 7042 GCATCTTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTAC 7101
Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTAGTAT 48117
|| | | |||||| | | |||| | || ||||| || |||
Sbjct 7102 CACAACTTTTGAGCCTTGACAGTCTTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTAC 7161
Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177
| |||| ||||||||| || || |||| || || || |||||| ||| | |
Sbjct 7162 AATGCTTC--AAATTCATCACCGTAAACATCTGGTAGGCCTGGTGCTTCATTTGGAGAGA 7219
Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237
||| | |||||| || | |||| ||||| |||| || | |||||| ||||| || |
Sbjct 7220 ACAAAGTCCAATCTTCGTTCTTTTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTG 7279
Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297
|| || || || || | | | |||||| || || ||| || | | || | |
Sbjct 7280 CTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGA 7339
Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357
|||| | ||||| | |||||||| || | || | || | |||| |||| || |
Sbjct 7340 AGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGT 7399
Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417
|||| ||||| || | || | ||||| ||||| |||| | | |||||| | |||||
Sbjct 7400 TACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATAC 7459
Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476
| || || |||| || || || | ||| ||| || ||| | || || ||| |
Sbjct 7460 CGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGT 7519
Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536
| || ||| |||||||| || | ||||| || | ||||| || | || || |||
Sbjct 7520 GCAA-ACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAA 7578
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| ||||| || ||| || |||| | ||| ||||| |||||||| ||||||
Sbjct 7579 ATACCTTCAATCGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGA 7638
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
||| || | ||| || | |||||| || || || | || || | || | |
Sbjct 7639 GGAGTACCAGCATTGAAAAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGG 7698
Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716
|| || ||||| | ||| || ||||| | || ||||| | || || | |||
Sbjct 7699 TTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATG 7758
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
| ||| | |||||| | |||| ||| || || ||| | | | || || ||||
Sbjct 7759 ATCATGTGTTGAGGGCGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCC 7818
Query 48777 AATGTTTTAAAACCAAAATAGTTGTAT 48803
|| || || ||||| || |||||| ||
Sbjct 7819 AAGGTCTTGAAACCGAAGTAGTTGAAT 7845
>seq35
Length=84627
Score = 140 bits (154), Expect = 4e-28
Identities = 411/628 (65%), Gaps = 19/628 (3%)
Strand=Plus/Plus
Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242
|||||||| |||| ||||| || | |||||| | ||| || ||||| || || |
Sbjct 61076 GACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATCCGGAATCCATAGGGCATAA 61135
Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302
||||| || | | || | |||||| || ||| |||| || | |||| | |||||
Sbjct 61136 AATAAGTCTCGGGCCCTCATTTCTTCTTTTCCATGATTCTTTCTTAGTTGTAAGAAGTCA 61195
Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362
|| || ||| ||||||||||||| || ||||| | |||| || ||||| || ||
Sbjct 61196 ATAATGTCACCATGCCATGGTTCCAAGTATATACAAAAGGCACCGGGGCGTTTGTTCCCA 61255
Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422
||||| || | |||||| || || |||||| |||| | | ||| || || | |||||
Sbjct 61256 CCTTGGTCGACATATCTTGCCGTGTTGTTAAAAACCCGCAGCATAGGCACTAAGCCATTA 61315
Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTAATTGAAA 48480
|| ||||||| | || || |||||| ||| | || |||||||| || || |
Sbjct 61316 GAAGTACCATTCGACCCTGAGATATAAGCACCATTTGCCCTTATATTCGACACAT--GTA 61373
Query 48481 TACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAATT 48539
| || |||||||| | ||| ||||| | |||| | || ||| || | ||||||
Sbjct 61374 TTCCAATACCACCAGATGCTTTCGATATCAAAGCAGTCTTGTGTAA-AGTCTTATAAATA 61432
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599
|| || || || ||| |||| | ||||| || |||| | |||
Sbjct 61433 CCATCAATGGAGTCTTCTTCCATAGCCACAAGAAAGCATGATGACAAATATTGATTTACT 61492
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || ||| || || || || || || |||||||| | || | ||| | |||| |
Sbjct 61493 GTACCGCTATTGAACAAAGTAGGTGAAGCGTGAATAAAATACTTTTGTGACATTAATTGA 61552
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGA--------TGTATACCTATAGATACAC 48711
|| || |||| || | ||||||| |||| | || ||| | | || || |
Sbjct 61553 TACGTCTCAAGTACTGCTTCTATAT--CATTAAATGGTCCGTGAATAGCAAGAGCAACTC 61610
Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATT---TTGTTATTTATTTTCAAAAGATATG 48768
||| |||||| | || || ||||| | || | || ||| | |||| | ||| |
Sbjct 61611 TCATGAACATAAACTGTGGAGTTTCATAAGTTTCCTCATTGTTTCTCTTCATCAAATACG 61670
Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATA 48796
|||| | |||||| ||||||| ||
Sbjct 61671 ATTTACAAAGTGTTTTCCAACCAAAGTA 61698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562101099109440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |