Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001692465.1_202016-07- 21] 1,096 sequences; 10,695,463 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq65 179 4e-40 seq35 140 4e-28 >seq65 Length=9430 Score = 179 bits (198), Expect = 4e-40 Identities = 598/927 (65%), Gaps = 6/927 (1%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 || ||||| || | ||||| ||||| || | ||| |||| |||| | |||||| Sbjct 6922 GCAATAGAAGCCAAGTTACAGACAGCGGTTTCCTCTGGGTTAGAGTATTCGACGATTTCA 6981 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 ||| | || | | |||||||||||||| || | |||||| | |||||||| Sbjct 6982 CAACACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAA 7041 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || || ||||| ||||| || || || |||||||| | |||| ||| | ||||| | | Sbjct 7042 GCATCTTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTAC 7101 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTAGTAT 48117 || | | |||||| | | |||| | || ||||| || ||| Sbjct 7102 CACAACTTTTGAGCCTTGACAGTCTTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTAC 7161 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | |||| ||||||||| || || |||| || || || |||||| ||| | | Sbjct 7162 AATGCTTC--AAATTCATCACCGTAAACATCTGGTAGGCCTGGTGCTTCATTTGGAGAGA 7219 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 ||| | |||||| || | |||| ||||| |||| || | |||||| ||||| || | Sbjct 7220 ACAAAGTCCAATCTTCGTTCTTTTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTG 7279 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || || || || || | | | |||||| || || ||| || | | || | | Sbjct 7280 CTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGA 7339 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 |||| | ||||| | |||||||| || | || | || | |||| |||| || | Sbjct 7340 AGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGT 7399 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 |||| ||||| || | || | ||||| ||||| |||| | | |||||| | ||||| Sbjct 7400 TACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATAC 7459 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476 | || || |||| || || || | ||| ||| || ||| | || || ||| | Sbjct 7460 CGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGT 7519 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | || ||| |||||||| || | ||||| || | ||||| || | || || ||| Sbjct 7520 GCAA-ACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAA 7578 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| || ||| || |||| | ||| ||||| |||||||| |||||| Sbjct 7579 ATACCTTCAATCGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGA 7638 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | ||| || | |||||| || || || | || || | || | | Sbjct 7639 GGAGTACCAGCATTGAAAAGTGTTGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGG 7698 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 || || ||||| | ||| || ||||| | || ||||| | || || | ||| Sbjct 7699 TTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATG 7758 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | |||||| | |||| ||| || || ||| | | | || || |||| Sbjct 7759 ATCATGTGTTGAGGGCGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCC 7818 Query 48777 AATGTTTTAAAACCAAAATAGTTGTAT 48803 || || || ||||| || |||||| || Sbjct 7819 AAGGTCTTGAAACCGAAGTAGTTGAAT 7845 >seq35 Length=84627 Score = 140 bits (154), Expect = 4e-28 Identities = 411/628 (65%), Gaps = 19/628 (3%) Strand=Plus/Plus Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 |||||||| |||| ||||| || | |||||| | ||| || ||||| || || | Sbjct 61076 GACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATCCGGAATCCATAGGGCATAA 61135 Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302 ||||| || | | || | |||||| || ||| |||| || | |||| | ||||| Sbjct 61136 AATAAGTCTCGGGCCCTCATTTCTTCTTTTCCATGATTCTTTCTTAGTTGTAAGAAGTCA 61195 Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362 || || ||| ||||||||||||| || ||||| | |||| || ||||| || || Sbjct 61196 ATAATGTCACCATGCCATGGTTCCAAGTATATACAAAAGGCACCGGGGCGTTTGTTCCCA 61255 Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422 ||||| || | |||||| || || |||||| |||| | | ||| || || | ||||| Sbjct 61256 CCTTGGTCGACATATCTTGCCGTGTTGTTAAAAACCCGCAGCATAGGCACTAAGCCATTA 61315 Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTAATTGAAA 48480 || ||||||| | || || |||||| ||| | || |||||||| || || | Sbjct 61316 GAAGTACCATTCGACCCTGAGATATAAGCACCATTTGCCCTTATATTCGACACAT--GTA 61373 Query 48481 TACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAATT 48539 | || |||||||| | ||| ||||| | |||| | || ||| || | |||||| Sbjct 61374 TTCCAATACCACCAGATGCTTTCGATATCAAAGCAGTCTTGTGTAA-AGTCTTATAAATA 61432 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 || || || || ||| |||| | ||||| || |||| | ||| Sbjct 61433 CCATCAATGGAGTCTTCTTCCATAGCCACAAGAAAGCATGATGACAAATATTGATTTACT 61492 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || ||| || || || || || || |||||||| | || | ||| | |||| | Sbjct 61493 GTACCGCTATTGAACAAAGTAGGTGAAGCGTGAATAAAATACTTTTGTGACATTAATTGA 61552 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGA--------TGTATACCTATAGATACAC 48711 || || |||| || | ||||||| |||| | || ||| | | || || | Sbjct 61553 TACGTCTCAAGTACTGCTTCTATAT--CATTAAATGGTCCGTGAATAGCAAGAGCAACTC 61610 Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATT---TTGTTATTTATTTTCAAAAGATATG 48768 ||| |||||| | || || ||||| | || | || ||| | |||| | ||| | Sbjct 61611 TCATGAACATAAACTGTGGAGTTTCATAAGTTTCCTCATTGTTTCTCTTCATCAAATACG 61670 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATA 48796 |||| | |||||| ||||||| || Sbjct 61671 ATTTACAAAGTGTTTTCCAACCAAAGTA 61698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101099109440