Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001692465.1_202016-07- 21] 1,096 sequences; 10,695,463 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq582 190 3e-43 seq493 120 4e-22 seq689 116 5e-21 >seq582 Length=15002 Score = 190 bits (210), Expect = 3e-43 Identities = 553/841 (66%), Gaps = 20/841 (2%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| ||| ||| | || ||||||||||| || || || |||| || || Sbjct 2218 AGCCTTTTGGTAGTCTGACACTCTCTTTTCGAAGAAATTGGTTTTACCGGCCAAGGAAAT 2159 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCG 17977 | |||||| || ||||| |||||| || || ||||| ||||| ||| | Sbjct 2158 GTTTTCCATAAAGTCGAATGGGTTAGTGACGTTGTAGTATTT--CTTGTTACCTAAAGCA 2101 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 | || ||| ||||| ||||||||||| ||||| ||||||||| |||||||| Sbjct 2100 ACCAGTAGTCTGTCTGCAACAAATTCGACGTATTGGTTCATCAAATCAGCGTTCATACCC 2041 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCT 18094 | ||| |||| |||||||| ||||| || | ||||| || |||||||||| || Sbjct 2040 AATAG--AGAAACGGGTAGAGCGTCAATGAAGTATCTCTTT-TCGATCTCAACAG---CT 1987 Query 18095 TTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154 | | | ||| || || | | ||||| | || | | || || ||| | Sbjct 1986 TCTGTGATGATTCTTTCGACAATCTTTGGATCTGGCTTGTTCTTCAAATGATGGAATAGT 1927 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||| || ||||| ||||||||||||||| | || |||||||| || || Sbjct 1926 AAACAGGCAAAGTCGGTGTGCAAACCTTCATCTCTGCAAATCAATTCGTTTGAGAATGTC 1867 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | ||| | || || | ||| || || | ||||| || ||| || Sbjct 1866 AAACCTGGCATCAAACCCTTCTTCTTCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAA 1807 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || | ||| || ||| |||||||| | ||||||||||| | | | || | || Sbjct 1806 AACACACCTTCCACGGCAGCGAACGCAACCAATCTTTCAGC-ATATAGAGCTTCGTCGTC 1748 Query 18335 A-GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | | |||||| | ||||||| | | || || || | || || || Sbjct 1747 ACGAATCCATCTAATGGCCCATTGAGCCTTTTCTTTGATTTGTGGAATGGTTTCAATGGC 1688 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| ||||| || | || || | ||| || || |||||||| || ||||| ||||| Sbjct 1687 ATTCAACAAGAACTCGTGCTCCTTAGGATCCTTGATGTAAGTGTCAATCAACAACGAATA 1628 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || || || ||| ||||||| || || |||| || || | | || || || Sbjct 1627 AGTCTCGGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAGCACTTGGCTTCTGG 1568 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||| | ||| | || |||| ||||| || || || || ||||| || | || Sbjct 1567 AATTTGCACCTCAGCGGAGAAGTTTTCCACCAAGTTTTCGTTCACGATACCATCGGAAGC 1508 Query 18574 TGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTGT 18629 || || || || | || | | | |||||| | | || || || || | |||| Sbjct 1507 AGCAAAGAACGCAAGCAC-TCTGGAGATGAAAAATCTCTCGTTCTCGTTCATTCTGTTGT 1449 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 |||| |||| | ||| || || | ||| | |||||| | ||||||||||| | |||| Sbjct 1448 TCCAGTCATGGAGATCCTTGGACAAATCGATTTCTTCAGCAGTCCAAAAAGAGGCCTCGG 1389 Query 18690 C 18690 | Sbjct 1388 C 1388 >seq493 Length=23338 Score = 120 bits (132), Expect = 4e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| || |||||||| || ||||||||| ||| Sbjct 23126 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAGACTATTACCTTGGAAGTCGAATCTTCC 23185 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| || ||||| || |||||||| ||| Sbjct 23186 GACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 23245 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| |||||||| | |||||| |||||||| || || || | Sbjct 23246 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTACA-- 23303 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || ||||| || || || Sbjct 23304 ACATCCAAAAGGAATCTACCCTTCACTTGGTCTT 23337 >seq689 Length=43288 Score = 116 bits (128), Expect = 5e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || || |||||||| || || || || || ||||||||| |||||| | ||| || Sbjct 11243 AAGACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCTGACACCATTGACAAT 11302 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || || || || ||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 11303 GTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAAAGATTGATCTTT 11362 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGG 156015 || |||||||| | ||||| |||||||| || || || | | ||||||| || Sbjct 11363 GCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCTGACTACA--ACATCCAAAAGGAAT 11420 Query 156016 CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || ||||| || || || ||| ||||||| ||| Sbjct 11421 CCACCCTTCACTTGGTCTTGAGACTAAGAGGTGGT 11455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731861973353600