Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001692465.1_202016-07- 21] 1,096 sequences; 10,695,463 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq65 163 8e-35 seq654 109 2e-18 seq1000 100 8e-16 seq238 95.1 4e-14 seq281 87.8 5e-12 seq35 86.0 2e-11 >seq65 Length=9430 Score = 163 bits (180), Expect = 8e-35 Identities = 612/951 (64%), Gaps = 13/951 (1%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||||||| |||| ||||| || || || |||| || |||||| || || |||| Sbjct 6923 CAATAGAAGCCAAGTTACAGACAGCGGTTTCCTCTGGGTTAGAGTATTCGACGATTTCAC 6982 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | |||| ||| ||| |||||| || || || ||||| || ||| || ||||||||| Sbjct 6983 AACACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAAG 7042 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||| |||||||| ||| ||||||| || || || | || || |||| || || Sbjct 7043 CATCTTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTACC 7102 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATAT--TTCATATA 155824 | | | | || || | ||| | | |||||| ||| || ||| || | Sbjct 7103 ACAACTTTTGAGCCTTGACAGTCTTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTACA 7162 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 || ||| | || ||||||||| ||| || || || | || || | || Sbjct 7163 ATGC-TTCAA-ATTCATCACCGTAAACATCTGGTAGGCCTGGTGCTTCATTTGGAGAGAA 7220 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATA 155942 || | |||| || || | || || ||| ||| || | ||| ||| | Sbjct 7221 CAAAGTCCAATCTTCGTT--CTTTTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGT 7278 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 || ||| | ||| ||||| || || | ||||| ||||| | | || | | Sbjct 7279 GCTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACG 7338 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG 156062 || || ||||| | || |||||| | |||| || || |||| |||||| Sbjct 7339 AAGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTG 7398 Query 156063 ---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 ||||| || || || || |||||||| || ||||| |||| | ||| ||||||||| Sbjct 7399 TTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATA 7458 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || || ||||| || || || || ||| | ||||| | || |||| || ||||| Sbjct 7459 CCGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATG 7518 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || | ||||||||||| | ||||| || || |||||||| | ||| | | || Sbjct 7519 TGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAA 7578 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||||||||| ||||| || | ||| | | ||| | || || | ||| || | Sbjct 7579 ATACCTTCAATCGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGA 7638 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTATTAGACATATA 156358 || || ||||| ||||| ||||| || | || || | || || |||| |||||| Sbjct 7639 GGAGTACCAGCATTGAAAAGTGTTGGCGAAGCGTGTGTGAAGTATCTTA-GAGACATTAG 7697 Query 156359 ATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418 | ||| || ||| || ||| |||| || ||||| |||| || || || ||||| Sbjct 7698 GTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCAT 7757 Query 156419 CCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTC 156478 ||| || ||||| || || ||| | || | |||| || | ||| | ||||| Sbjct 7758 GATCATGTGTTGAGGGCGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTC 7817 Query 156479 CAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 || || || || ||||| || | || | ||||| | || ||| |||| Sbjct 7818 CAAGGTCTTGAAACCGAAGTAGTTGAATTGGAAATCTCTGTCGTAGACAAT 7868 >seq654 Length=49239 Score = 109 bits (120), Expect = 2e-18 Identities = 254/381 (67%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 59988 AACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAAT 60047 ||||||| |||||||| | ||||||| | |||||| ||||| | || | || Sbjct 20688 AACCAGTCCCAATACCTTCACAACCATTGACCAAAATCATAGGGATTACAGGCAAGTACC 20747 Query 60048 AAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTT 60107 | | || ||||| | | ||||||| | | ||| ||||| | ||||| | Sbjct 20748 ATTCAGGTTCAACTGTTTGCTCATCATCCTGAATGTAGGTTAATAATGGATCGTCTAGAG 20807 Query 60108 CGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGAT--GC 60165 | ||| || | ||| ||||| | | |||||| ||||| ||||||| || Sbjct 20808 AGTTAAAGATTTTTCTAGTGATCTTATTAAGCTCTGTGAAGATATA--TCTCGGAGCAGC 20865 Query 60166 TGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAAT 60225 || || || ||||| || | ||| || ||| ||||| || | || | | ||| Sbjct 20866 TGAATCTTTACCACCAGTAGCTCTGGTACCGAATGCACCGTTAGGTTTTAACAAGTAAAT 20925 Query 60226 GTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTC 60285 ||||||||| || || |||| ||| || | ||||||||| | || || ||||| Sbjct 20926 GTTGTTAGAACCAACAAAATCTTGGGCTAAACCAACAATCGTTTGATATAGGGAAGCTTC 20985 Query 60286 ACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 ||||||||| ||||| | |||||| |||||||| |||| | ||| || ||||| ||||| Sbjct 20986 ACCGTGATGGTATCCGGTATGTTCAGAAACATAACCACCTAGTTGGGCAACTTTGATTTC 21045 Query 60346 GGAGTGGAGTTTTTTCTTGAA 60366 || | | ||| |||| || Sbjct 21046 TGATTTTAAATTTCTCTTAAA 21066 >seq1000 Length=16104 Score = 100 bits (110), Expect = 8e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||| ||| || ||| |||||||| | | |||| ||||||||| || |||||||| || Sbjct 13941 ATCGTAATGAACCATGATGTCTTCTAAAGCTTTGACTAAACGACGTTGGATATAACCGGT 13882 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | |||||| ||||| ||||| || | ||| ||||||||||||| |||||||| || Sbjct 13881 TTCTGCTGTTTTCACAGCAGTATCGATCAAACCTTCACGACCACCCATCGCATGGAAAAA 13822 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACC 302720 | |||| || || || | | | | ||| | ||||||||||| Sbjct 13821 GAATTCTTGAGGAGTTAAACCTCTCAAATAAGAGTTTTCAACGAAACC 13774 >seq238 Length=21018 Score = 95.1 bits (104), Expect = 4e-14 Identities = 260/392 (66%), Gaps = 10/392 (3%) Strand=Plus/Plus Query 288957 TAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC---TTGAATCACCCGA 289013 || || |||||| | || ||| |||||||| |||| ||| | ||| | |||| Sbjct 16668 TAGAAGTTGATTCAAAGTGGCTTCTCTTTCATCGTTTGCACCACCCATTGCACCACCTTT 16727 Query 289014 ATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAG--AA 289071 || ||| ||| ||||||| |||||| |||||||| | ||| || | || | || Sbjct 16728 -TC-CTC-TTTCCTTACCAATAGCATCGATTTCGTCCACGAAGATAATTGCTGGGGCTAA 16784 Query 289072 TTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATT 289131 ||| || || | | || || || | |||||||| || |||| ||||||| ||||| Sbjct 16785 CTTT--CTTGCGTTCTCGAACAAATCACGAACACGGGAAGCACCAACACCAACAAACATT 16842 Query 289132 TCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCC 289191 ||||||||||| ||| | || || | |||| ||| |||||| || || ||| Sbjct 16843 TCTACAAATTCGGAACCTGACACAGACAAAAATGGAACACCTGCTTCACCGGCAGTAGCC 16902 Query 289192 CTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACT 289251 | || | | || |||||||| || ||||| || ||| | | | || |||| | | Sbjct 16903 TTTGCTAACAAAGTTTTACCTGTACCTGGTGGACCAGATAAAATAGCACCTCTTGGGATT 16962 Query 289252 TTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGT 289311 | || || || || ||||| || | | ||| || | || | |||| || | Sbjct 16963 TGAGCACCCAATTTTTTGTACTTCTCTGGCTTTTGTAAGAAATGGACGAATTCCATAATT 17022 Query 289312 TCATATTTTGCCTCATCACATCCTGCTACATC 289343 || |||||| |||| ||| ||||| ||||| Sbjct 17023 TCGCTTTTTGCTTCATTACAACCTGCCACATC 17054 >seq281 Length=65337 Score = 87.8 bits (96), Expect = 5e-12 Identities = 208/310 (67%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| || ||| | |||||| ||| | ||||| ||||| || || | | || Sbjct 58764 CCACATATACCACAAATATGGACTCTGAATGCATCCGATGCTTCCATTAATCTTTCTTTT 58823 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 ||| || ||||||||||| ||||||||||||||| ||||| || ||||| | | | Sbjct 58824 AAGAACGCAGCTGCACCGTGTGCAATCATACAATCACGTTCCATCTCTCCGAATCTTAAA 58883 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATG 251592 |||||||| | || ||||| || | ||||| | || ||| ||| ||||| | Sbjct 58884 CCACCATCTCTAGATCTACCTTCTACCGGCTGCCTGGTTAGAACTTGCATTGGACCTCTT 58943 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCG 251652 | | ||| ||| || | |||||||| | | | |||||| | | ||||| Sbjct 58944 GCTCTTGCATGAATCTTGTCGTCCACCATATGTCTTAATCTTTGGTAGTAAGTAGGACCA 59003 Query 251653 ATGAAGATGCTCGAAGGCATTTGC-TCT--CCAGTTAGAGCGTTATACATAACTTCGTTT 251709 | ||| || | | | |||| || ||| ||||| || |||| |||||||||||| Sbjct 59004 AAGAATAT--TTG-TGCCATTAGCTTCTTACCAGTGTGACCGTTGTACATAACTTCGAAA 59060 Query 251710 CCATTAGATT 251719 ||| ||||| Sbjct 59061 CCACGAGATT 59070 >seq35 Length=84627 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | ||||| | ||| ||||||||||||||||| | | | ||||||||| | Sbjct 69734 GCACCATATGCAATAACACAGTCACGTTCCATTTCACCCAATCTTAAACCACCATCTCTA 69793 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACC-CTGAGCACGATAATT 233391 || ||||| | || |||||| |||||||| | |||||| || ||| || | || Sbjct 69794 GATCTACCTTCCGTTGGTTGACGCGTTAAAACGGCTCTTGGTCCTCTG-GCTCTGGCATG 69852 Query 233392 AATTTTATCTTTAACCATATGCTTCA 233417 || |||||| |||||||||||||| Sbjct 69853 CATCTTATCTAAAACCATATGCTTCA 69878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471796932001352