Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001692465.1_202016-07- 21] 1,096 sequences; 10,695,463 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq53 161 8e-35 seq582 116 3e-21 >seq53 Length=11548 Score = 161 bits (178), Expect = 8e-35 Identities = 328/481 (68%), Gaps = 16/481 (3%) Strand=Plus/Plus Query 19310 CAGATGTCATTAAACAATTGGGATGTAA-ACATGTTCGTGGACTTTTGCTTTATGGGCCA 19368 ||| ||||||| || | ||||| | || ||| || || || ||| | | ||| || Sbjct 2584 CAGCTGTCATTGAAAAGTTGGG-TATATCACACGTAAAGGGTCTCTTGTTGTTTGGTCCT 2642 Query 19369 CCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAA 19425 || ||| ||| ||||||||||| || ||| || | ||| | | | | | ||| || Sbjct 2643 CCAGGTACTGGTAAAACATTAATCGCAAGAAAAATCGGTACAATGTTGAATGCCAAAGAA 2702 Query 19426 CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAA 19485 || || ||||| || ||||| |||||| | | ||| ||||| || || |||||| Sbjct 2703 CCA---AAGATTGTTAACGGTCCAGAAATCCTCAGTAAGTATGTGGGCTCTTCAGAAGAA 2759 Query 19486 AATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAG- 19544 ||| | || ||||| || ||||| | |||| | ||| | |||| | | || Sbjct 2760 AATATCCGTAACTTGTTCAAGGATGCTGAGGCAGAATATAAA-GCCAAGGGTGAAGAATC 2818 Query 19545 TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--- 19601 ||| ||||||||||| || | ||||||||||| | | | |||||||||||||| Sbjct 2819 TTCATTGCACATTATCATTTTCGATGAATTGGATTCTGTGTTCAAGCAAAGAGGTTCAAG 2878 Query 19602 ---TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 || | | || || |||| ||||| |||||| | || | ||| | || || Sbjct 2879 AGGTGACGGCACAGGCGTTGGAGACAACGTTGTTAATCAATTGCTTGCTAAAATGGATGG 2938 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| ||||| | || ||||| || |||||||| |||||||| | ||| || || || Sbjct 2939 TGTTGACCAATTAAACAATATATTGGTTATTGGTATGACTAACCGTAAGGATTTGATCGA 2998 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || ||||| ||||| || ||| | || ||| | || |||||||| | ||||| || || Sbjct 2999 TAGTGCCTTGTTACGTCCTGGTAGATTTGAAGTCCAGGTCGAAATTCAATTACCAGACGA 3058 Query 19779 A 19779 | Sbjct 3059 A 3059 >seq582 Length=15002 Score = 116 bits (128), Expect = 3e-21 Identities = 559/867 (64%), Gaps = 40/867 (5%) Strand=Plus/Plus Query 43709 TTTCCAATTCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTG 43767 ||||| | |||| || || || || ||| || || || | ||| |||| || ||||| Sbjct 1345 TTTCCCAATCAAGTACCACGAAATCTGGGAAGCTTATAAGAGAGCCGAGGCCTCTTTTTG 1404 Query 43768 GACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCA-C 43826 ||| || |||||| | |||||| | || || | | |||| || | || | | Sbjct 1405 GACTGCTGAAGAAATCGATTTGTCCAAGGATCTCCATGACTGGAA--CAACAGAATGAAC 1462 Query 43827 AAGAA--AAACATTTTATATCTTTGGTTT--TGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 |||| | | ||||| |||| | | | ||||| |||||||| ||| || || Sbjct 1463 GAGAACGAGAGATTTTTCATCTCCAGAGTGCTTGCGTTCTTTGCTGCTTCCGATGGTATC 1522 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATG 43941 || || ||||| ||||| || | ||| || || ||| | |||||||| || Sbjct 1523 GTGAACGAAAACTTGGTGGAAAACTTCTCCGCT-GAGGTGCAAATTCCAGAAGCCAAGTG 1581 Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 || || || || |||||| || ||||| ||||| || || | || | |||| Sbjct 1582 CTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCCGAGACTTATTCGTTGTTGAT 1641 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGA----TTGTTTAATGCGATAGAAA 44057 || || |||||||| ||| | || |||| ||| ||||| ||||| || |||| Sbjct 1642 TGACACTTACATCAAGGAT---CCTAAGGAGCA-CGAGTTCTTGTTGAATGCCATTGAAA 1697 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 | | || || ||| | || || | |||||| ||| |||||| | | || Sbjct 1698 CCATTCCACAAATCAAAGAAAAGGCTCAATGGGCCATTAGATGGATTCGTGACGACGAAG 1757 Query 44118 CTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 || | || ||| || | || ||||| || | |||||||| | || || || || | Sbjct 1758 CTCTATATGCTGAAAGATTGGTTGCGTTCGCTGCCGTGGAAGGTGTGTTTTTCTCTGGTT 1817 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | || || ||||| || ||||| ||||| ||||||||||| || ||||| || |||| Sbjct 1818 CCTTCGCTGCCATCTTCTGGTTGAAGAAGAAGGGTTTGATGCCAGGTTTGACATTCTCAA 1877 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 | || || || | | |||||||| || || ||| ||||| || || || || || Sbjct 1878 ACGAATTGATTTGCAGAGATGAAGGTTTGCACACCGACTTTGCCTGTTTACTA-TTCCAT 1936 Query 44295 ATCTAGGAGACGATAAGCC---TTCATGTAAGACAAT-TACAGATATTGTTGTAGAGGCA 44350 | | ||| | ||||| | || |||| | | ||| || | ||| || Sbjct 1937 CATTTGAAGA--ACAAGCCAGATCCA---AAGATTGTCGAAAGA-ATCATCACAGAAGCT 1990 Query 44351 GTAAAGATAGAACA-AGA-ATTT--ATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 || |||| ||| | ||| | || |||| || |||| || | || | || || Sbjct 1991 GTTGAGATCGAAAAGAGATACTTCATTGAC----GCTCTACCCGTTTCTCTATTGGGTAT 2046 Query 44407 GAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 ||| | ||||||||||||||| | |||| ||||||| | |||| | | | Sbjct 2047 GAACGCTGATTTGATGAACCAATACGTCGAATTTGTTGCAGACAGACTACTGGTTGCTTT 2106 Query 44467 GGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTT 44526 ||| | | ||| |||| | || ||||| || || ||||||||||| ||||| || Sbjct 2107 AGGTAACAAGAAATACTACAACGTCACTAACCCATTCGACTTTATGGAAAACATTTCCTT 2166 Query 44527 GGAAGGCAAAACAAACTTTTTTGAAAA 44553 || || ||||| || || || ||||| Sbjct 2167 GGCCGGTAAAACCAATTTCTTCGAAAA 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450690981480