Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001854445.1_202016-10- 26] 8 sequences; 10,914,453 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 seq1 105 1e-17 seq8 89.7 1e-12 >seq3 Length=1603786 Score = 114 bits (126), Expect = 3e-20 Identities = 297/445 (67%), Gaps = 17/445 (4%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || ||||| || ||||| | || || |||| | || || |||| |||||| Sbjct 439713 GTTGCGTTCGCTGCCGTGGAAGGTGTGTTTTTCTCTGGTTCCTTTGCTGCCATCTTCTGG 439772 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | |||| | |||| ||| | |||| ||| || || || |||| || || Sbjct 439773 TTGAAGAAGAAGGGTTTGATGCCAGGTTTGACCTTCTCAAACGAATTGATTTGCAGAGAT 439832 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||| || |||| || | | |||| || | | Sbjct 439833 GAAGGTTTGCACACCGACTTTGCCTGTTTGCTATTCCATCA----TTTGAAGAA---CAA 439885 Query 102098 TCAAGAGA-AAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || |||| | |||| | |||| ||||| || || ||| |||| | Sbjct 439886 GCCAGATCCAAAGATTGTCGAAAGAATCATCACAGAAGCTGTTGAGATCGAA-AAGAGAT 439944 Query 102154 TCT-CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 || || | | || || ||| || |||| |||||| | ||||||| ||| | Sbjct 439945 ACTTCATCGACGCTCTACCCGTTTCTCTATTGGGTATGAACGCTGATTTGATGAACCAAT 440004 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAA 102270 || | |||||||| ||||| | |||| |||||| | || || ||||| |||| || Sbjct 440005 ACGTCGAATTTGTTGCAGACAGACTACTGGTTGCTTTAGGTAACAAGAAAT--ACTACAA 440062 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 || || ||||| ||| || ||||| || |||||| | | ||| ||||| || || Sbjct 440063 CGTCACTAACCCATTCGACTTTATGGAAAACATTTCCTTGGCCGGTAAAACCAATTTCTT 440122 Query 102331 TGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 440123 CGAAAAGAGAGTGTCAGACTACCAA 440147 >seq1 Length=1734505 Score = 105 bits (116), Expect = 1e-17 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443 |||||| ||||| ||||||||||| || || || ||||||||| | ||||| || || Sbjct 873952 GATAGACGTGAGGGTGATTTGGGACCAGTTTATGGGTTCCAATGGAGACATTTCGGAGCA 873893 Query 35444 GAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATA 35503 ||||| | || ||| |||||| | ||| | ||| ||||||| || | || | Sbjct 873892 GAATACAAGACATGTGACGATGATTATTCGGGACAAGGTGTTGATCAGTTAAGCGATGTG 873833 Query 35504 CTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 | | | ||| |||| ||||| | ||||||||||| |||||| | |||||||| || Sbjct 873832 ATTCATAAGTTGA-AGAACAATCCTTACGATAGAAGGATTATTATGTCAGCATGGAACCC 873774 Query 35563 TATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | ||| | | ||||||||||| |||||||| || |||| || ||||| Sbjct 873773 TCCTGATTTCCCAAAAATGGCTCTTCCACCATGCCATGTGTTCTCTCAGTTCTATGT 873717 >seq8 Length=958696 Score = 89.7 bits (98), Expect = 1e-12 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| ||| | || | || ||||| ||||| ||||| || || ||||| | ||| Sbjct 335455 TGAATGTGCAAACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTG 335514 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 || |||||||| |||||| ||| || | | | ||| ||||| || || || | ||| Sbjct 335515 TCGTAAATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGT 335574 Query 94894 GGTGTGACT-GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 || ||| || ||| ||| || ||||| || ||||| || || || || || Sbjct 335575 GGA-TGAGGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGA 335633 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| || | || ||||| | || || || ||| ||||| || ||||||||||| Sbjct 335634 CATTAGGTTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCAC 335693 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTCA 95040 | ||| ||||||| ||||| || ||| Sbjct 335694 TCTCATGATCATGTGTTGAGGACGTTCA 335721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583898567640