Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001854445.1_202016-10- 26] 8 sequences; 10,914,453 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 176 5e-39 seq5 156 5e-33 >seq8 Length=958696 Score = 176 bits (194), Expect = 5e-39 Identities = 597/927 (64%), Gaps = 6/927 (1%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA 47939 || ||||| || | ||||| ||||| || | ||| |||| |||| | |||||| Sbjct 334864 GCGATAGAAGCCAAGTTACAAACAGCGGTTTCTTCTGGGTTAGAGTATTCAACGATTTCA 334923 Query 47940 GCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACAT 47999 ||| | || | | |||||||||||||| || | |||||| | |||||||| Sbjct 334924 CAACACAAGTTCGAAGACTTGATAGTACCCAAGTTCTTTTGATTACTCTTCTTGTTACAA 334983 Query 48000 GCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTC 48059 || |||||||| ||||| || || || |||||||| | |||| ||| | ||||| | | Sbjct 334984 GCATCCTTGTATAGCATGAATGGGGTACCAGTTTCGGTTTGAGCTTCCAAGATAGCGTAC 335043 Query 48060 CAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTAGTAT 48117 || | | |||||| | | |||| | || ||||| || ||| Sbjct 335044 CACAACTTTTGAGCCTTGACAGTCTTTCTACCACGGCCTTCTCTCTCGTAACGTTCGTAC 335103 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | |||| ||||||||| || || |||| ||| || || ||| || ||| | | Sbjct 335104 AATGCTTC--AAATTCATCACCGTAAACATCTGGTAAGCCTGGTGCTTCGTTTGGAGAGA 335161 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 ||| | |||||| || | || | ||||| |||| || | |||||| ||||| || | Sbjct 335162 ACAAAGTCCAATCTTCGTTCTTCTCGACTCTCTTCATGAAAAGATCTGGGATCCATAGTG 335221 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || || || || || | | | |||||| || || ||| || | | || | | Sbjct 335222 CTGGGAACAAGTCTCTTGCACGGATTTCTTCCTTACCGTGGTTCTTTCTGATGTCGACGA 335281 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 |||| | ||||| | |||||||| || | || | || | |||| |||| || | Sbjct 335282 AGTCGAAGATATCTGAGTGCCATGGCTCGATGTACAAGGCGAAGGCACCAGGTCTCTTGT 335341 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 |||| ||||| || | || | ||||| ||||| |||| | | |||||| | ||||| Sbjct 335342 TACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAAACACGAATCATTGGAATAATAC 335401 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476 | || || |||| || || || | ||| ||| || ||| | || || ||| | Sbjct 335402 CGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCGGTAGAACGAATGTTGTGAATGT 335461 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | || ||| |||||||| || | ||||| || | ||||| || | || || ||| Sbjct 335462 GCAA-ACCAATACCACCAGCGGTCTTAGAGATCATGGCACATTCCTTCAAAGTGTCGTAA 335520 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| || ||| || |||| | ||| ||||| |||||||| |||||| Sbjct 335521 ATACCTTCAATGGAATCTTCCTTCATGGCCACTAGGAAACATGATGACATTTGTGGATGA 335580 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | ||| || | ||| || || || || | || || | || | | Sbjct 335581 GGAGTACCAGCATTGAAAAGTGTAGGCGAAGCGTGTGTGAAGTATCTTAGAGACATTAGG 335640 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 || || ||||| | ||| || ||||| | || ||||| | || || | ||| Sbjct 335641 TTGTAAGTTTCCAAAACCTTTTCAATATCTCTACCGTGGATACCGACAGCCACTCTCATG 335700 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | |||||| | |||| ||| || || ||| | | | || || |||| Sbjct 335701 ATCATGTGTTGAGGACGTTCAGCAACCTTACCGTTGATTCTTAGCAAGTAAGAACGTTCC 335760 Query 48777 AATGTTTTAAAACCAAAATAGTTGTAT 48803 || || || ||||| || |||||| || Sbjct 335761 AAGGTCTTGAAACCGAAGTAGTTGAAT 335787 >seq5 Length=1351113 Score = 156 bits (172), Expect = 5e-33 Identities = 417/631 (66%), Gaps = 25/631 (4%) Strand=Plus/Minus Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 |||||||| |||| ||||| || | |||||| | ||| || ||||| ||||| | Sbjct 98531 GACCAATCTTCATTATTTTCAACACGTTGCATAAAAAGATCCGGAATCCATAGAGCATAA 98472 Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302 ||||| || | | || | |||||| || || |||| || | |||| | ||||| Sbjct 98471 AATAAGTCTCGGGCCCTCATTTCTTCTTTTCCGTGATTCTTTCTTAGTTGTAAGAAGTCA 98412 Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362 || ||||| ||||||||||||| || ||||| | |||| || ||||| || || Sbjct 98411 ATAATATCCCCATGCCATGGTTCCAAGTATATACAAAAGGCACCAGGGCGTTTGTTCCCA 98352 Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422 |||||||| | |||||| || || |||||| |||| | | ||| || || | ||||||| Sbjct 98351 CCTTGATCGACATATCTTGCTGTGTTGTTAAAAACCCGCAGCATAGGAACTAAACCATTT 98292 Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT--ACTAATTGAAA 48480 || ||||||| | || || |||||| ||| | || |||||||| || || | Sbjct 98291 GAAGTACCATTCGACCCTGAGATATAAGCACCATTTGCCCTTATATTTGACACAT--GTA 98234 Query 48481 TACCTATACCACC---TGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAA 48536 | || |||||||| |||| || ||||| | |||| | || ||| || | |||| Sbjct 98233 TTCCAATACCACCAGATGCC---TTTGATATCAAAGCAGTCTTGTGTAA-AGTCTTATAA 98178 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || || || ||| || ||| |||| | ||||| || |||| | ||| Sbjct 98177 ATACCATCAATAGAGTCTTCTTCCATAGCCACAAGAAAGCATGATGACAAATATTGATTT 98118 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || ||| || || || || || || |||||||| | || | ||| | ||| Sbjct 98117 ACTGTACCGCTATTGAACAAAGTAGGTGAAGCGTGAATAAAATACTTTTGTGACATTAAT 98058 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGA--------TGTATACCTATAGATA 48708 | || || |||| || | |||||||| |||| | || ||| | | || | Sbjct 98057 TGGTAAGTCTCAAGTACTGCATCTATAT--CATTAAATGGTCCGTGAATAGCAAGAGCAA 98000 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATT---TTGTTATTTATTTTCAAAAGAT 48765 | | ||| |||||| | || || ||||| | || | || ||| | |||| | || Sbjct 97999 CTCTCATGAACATAAACTGCGGAGTTTCATAAGTTTCCTCATTGTTTCTCTTCATCAAAT 97940 Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 |||| || | ||| || |||||||||| Sbjct 97939 ATGACTTACAAAGTGTCTTCCAACCAAAATA 97909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108743789120