Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001854445.1_202016-10- 26] 8 sequences; 10,914,453 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 149 1e-30 seq3 129 1e-24 seq5 120 5e-22 >seq2 Length=1698977 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || ||||| || | |||| || || ||| || || || Sbjct 909285 ATACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCG 909226 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || || | |||| || |||||||||||||||||||| ||||| |||||||| || Sbjct 909225 GATAGAGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGGTCTGGA 909166 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| || ||||| ||||| || || ||||| Sbjct 909165 GGAATACCTTCCTTGTCTTGAATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCA 909106 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| || || || || || | ||| || ||||| Sbjct 909105 ACTTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 909056 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || ||||| || | |||| || || || || || || Sbjct 909057 ATACCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCG 908998 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || || | |||| || ||||| ||||| |||||||| ||||| |||||||| || Sbjct 908997 GATAGAGTTCTTCCGTCTTCTAATTGCTTACCCGCAAAAATCAATCTTTGTTGGTCTGGA 908938 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || ||| || ||||| ||||| || || ||||| Sbjct 908937 GGAATACCTTCCTTATCTTGGATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCA 908878 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| ||||| ||||| ||||| || || | || || |||||||| Sbjct 908877 ACTTCCAAAGTGATGGTCTTACCTGTTAACGTCTTGACAAAGATTTGCATTTT 908825 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || |||| || || | |||| || ||||| |||||||||||||| ||||| Sbjct 909465 ATGTTGTAGTCGGATAGAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAAATCAATCTT 909406 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| || ||||| || ||| || ||||| ||||| Sbjct 909405 TGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTCACATTGTCAATAGTG 909346 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| ||||| | ||| || || ||||| || || || || | ||| || ||| Sbjct 909345 TCAGAAGATTCGACTTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGC 909286 Query 172068 AT 172069 || Sbjct 909285 AT 909284 >seq3 Length=1603786 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| |||| || || || || | || | || || || || || Sbjct 1548425 ATAATACCACCTCTTAGTCTCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAG 1548484 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || |||| |||||||| ||||||||||| || ||||| |||||||| Sbjct 1548485 TCAGACAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCT 1548544 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| || || || || ||| Sbjct 1548545 GGTGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAAGAT 1548604 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||| | ||| ||||| |||||||| || || || | ||| Sbjct 1548605 TCGACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTGACGAA 1548648 >seq5 Length=1351113 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || | |||| || || || || Sbjct 1192859 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTG 1192800 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| ||||||||||| || ||||| |||||| Sbjct 1192799 TAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 1192740 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || || || || ||||| || ||||| || ||| || ||||| || || || || Sbjct 1192739 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCGGAA 1192680 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| | ||||| || |||||||||| || || | ||| || ||||| Sbjct 1192679 GATTCGACTTCCAAGGTAATAGTCTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1192624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135909486400