Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001854445.1_202016-10- 26] 8 sequences; 10,914,453 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 seq5 125 6e-24 seq3 122 7e-23 >seq2 Length=1698977 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || || ||||| || ||||| ||||||||||| || || | Sbjct 909282 CCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGAATGTTGTAGTCGGAT 909223 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | |||||| |||||| | ||||||||||| || || || ||| Sbjct 909222 AGAGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGGTCTGGAGGA 909163 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | || ||| | || | |||||||||| ||| || Sbjct 909162 ATACCTTCCTTGTCTTG-AATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCAAC 909104 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || |||||||| || || || || || || || ||||| Sbjct 909103 TTCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACGAAGATTTGCAT 909056 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || ||||| ||||| | || ||||| || || |||||||| ||||| ||||| || || Sbjct 909513 TGACCTCCTCTCAACCTCAAGACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTCG 909454 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | || | || || | ||| || |||||| | ||||||||||| || || || Sbjct 909453 GATAGAGTTCTTCCGTCTTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGA 909394 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 |||||||| || |||||||| ||| || | || ||| | || | |||||||||| ||| Sbjct 909393 GGAATACCTTCCTTGTCTTG-AATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTC 909335 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | ||| ||||| || || || || || || || || || ||||| Sbjct 909334 GACTTCCAAAGTGATAGTCTTACCTGTCAAAGTCTTGACGAAGATTTGCAT 909284 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || || ||||| || ||||| ||||| ||||| || || | Sbjct 909054 CCACCTCTCAATCTCAAGACTAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGGAT 908995 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | ||| || || ||| | ||||||||||| || || || ||| Sbjct 908994 AGAGTTCTTCCGTCTTCTAATTGCTTACCCGCAAAAATCAATCTTTGTTGGTCTGGAGGA 908935 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || ||||| | || || ||| | || | |||||||||| ||| ||| Sbjct 908934 ATACCTTCCTTATCTTGGATCTTAGACTTCACATTGTCAATAGTGTCAGAAGATTCAACT 908875 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || | ||| || || || || ||||| || || ||||| || |||||||| || Sbjct 908874 TCCAAAGTGATGGTCTTACCTGTTAACGTCTTGACAAAGATTTGCATTTTTAA 908822 >seq5 Length=1351113 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| ||||| || ||||| ||||| ||||| || || | Sbjct 1192850 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAC 1192791 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | ||| || |||||| | ||||||||||| || || || ||| Sbjct 1192790 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGGA 1192731 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | || |||||| | || | ||||| ||| ||| ||| Sbjct 1192730 ATACCTTCCTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCGGAAGATTCGACT 1192671 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| || ||||||| ||| || || || || ||||| Sbjct 1192670 TCCAAGGTAATAGTCTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1192624 >seq3 Length=1603786 Score = 122 bits (134), Expect = 7e-23 Identities = 160/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| |||||||| ||||| ||||| || || | | || | | || || Sbjct 1548449 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCGTCTTCC 1548508 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || |||||| | ||||||||||| || || || |||||||| || |||||||| Sbjct 1548509 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTG- 1548567 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | |||||| | || | ||||||||| ||| ||||| | ||| || || || Sbjct 1548568 AATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCGACTTCCAAAGTGATGGTCTT 1548627 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||||| ||||| || || | | ||| |||||||| Sbjct 1548628 ACCAGTCAAGGTCTTGACGA--AACTG--TTTTAAAA 1548660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219162441128