Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20marxianus_20[genbank_20GCA_5F001854445.1_202016-10- 26] 8 sequences; 10,914,453 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq2 118 9e-22 seq3 111 1e-19 >seq5 Length=1351113 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 |||||||| || || || || || || || || ||| ||||||| | ||||| ||| | Sbjct 1192621 GCCATGCAAATTTTCGTCAAGACCCTAACTGGTAAGACTATTACCTTGGAAGTCGAATCT 1192680 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | ||||| | ||||| || || |||||||| ||||| || || || || Sbjct 1192681 TCCGACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGAC 1192740 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| | || || | || || || ||||||||||| || || | || || ||| Sbjct 1192741 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTAC 1192800 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || ||| | || ||||| ||| | ||| | ||||| Sbjct 1192801 AACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGG 1192850 >seq2 Length=1698977 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| ||||| | || ||| | ||||| ||| | || Sbjct 909056 ATGCAAATCTTCGTCAAGACTTTGACAGGCAAAACCATCACTTTGGAAGTTGAATCTTCT 909115 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| ||||| || || || || ||| Sbjct 909116 GACACTATTGACAATGTGAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 909175 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || |||||||| |||||| | || | ||||| |||||| Sbjct 909176 CAAAGATTGATTTTTGCTGGTAAACAATTAGAAGACGGAAGAACTCTATCCGACTACAAC 909235 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || || || ||| | ||| | ||||| || Sbjct 909236 ATTCAAAAGGAATCTACACTTCACTTAGTCTTGAGATTGAGAGGTGGTAT 909285 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| || ||| |||| ||| | ||||| ||| | || Sbjct 909284 ATGCAAATCTTCGTCAAGACTTTGACAGGTAAGACTATCACTTTGGAAGTCGAATCTTCT 909343 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| ||||| || || || || ||| Sbjct 909344 GACACTATTGACAATGTGAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 909403 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || ||||| |||||| | || | ||||| |||||| Sbjct 909404 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAAGACGGAAGAACTCTATCCGACTACAAC 909463 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | || ||||| ||| | ||| | || || Sbjct 909464 ATCCAAAAGGAATCCACACTCCACTTGGTCTTGAGGTTGAGAGGAGG 909510 >seq3 Length=1603786 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 1548648 TTCGTCAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCTGACACCATT 1548589 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || ||||||||||| ||||| || ||||| || ||||| | || Sbjct 1548588 GACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAAAGATTG 1548529 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || || | || || |||||||| |||||| Sbjct 1548528 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTGTCTGACTACAACATCCAAAAG 1548469 Query 27177 GAGTCGACCTTACATTTGGTTTTG 27200 || || ||| | || ||||| ||| Sbjct 1548468 GAATCCACCCTTCACTTGGTCTTG 1548445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918356508160