Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=2687137 Score = 221 bits (244), Expect = 1e-52 Identities = 571/863 (66%), Gaps = 13/863 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||||||| ||| | |||||||||||||| || || || | ||||| || || | Sbjct 442717 TTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTCT 442776 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| |||||||| ||||| || | || | | | || | | ||||| | | Sbjct 442777 CCATGAAATCAAATGGATTGGTGACGTTGTACACTTTTTTG--TTGCCCAGAGCTACCAG 442834 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 || |||||| || || || || | ||| || ||||| ||| ||| || ||||| | | Sbjct 442835 TAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGCAA 442894 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || |||||||| | ||| || || || ||| ||| | || || ||| |||| || Sbjct 442895 GGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATAAT 442954 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATG--GTTTAGGTGTTTAAACATTAGACACGCG 16207 | | || || | || | | || ||| | ||| || | | || || Sbjct 442955 CTT--TTCAACGATTTCCTCACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCAAGCA 443012 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 |||||| |||| |||||| ||||||| ||||| || ||||| || || || |||||| Sbjct 443013 AAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGC 443072 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || |||| || || |||||||| || | ||| || || ||||||||||| ||||| Sbjct 443073 ATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACCT 443132 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 ||||||| || || || | || ||||| ||| || |||||| | || ||||||| Sbjct 443133 TCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCAT 443192 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447 || |||| || || |||| ||| ||||| || || || ||||| || ||||| Sbjct 443193 CTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAAG 443252 Query 16448 TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAG 16507 || ||| | ||| | || || |||||||||| || ||| |||| ||| Sbjct 443253 AATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGAG 443312 Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || |||||||| || || ||||| || || || ||| || || | | ||| || Sbjct 443313 TGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAACC 443372 Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 || || || |||| ||| || ||||| || ||||| ||| ||||||||||| Sbjct 443373 TCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAA- 443431 Query 16628 GCCAATATGTGCTTA-ATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAATCTTT 16683 | ||| | | | || ||||| || || ||| || || ||| ||| || | Sbjct 443432 GGCAAGAACTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTATTCCAGTCATG 443491 Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATA 16743 ||||| || | || | ||| || | ||||||||| ||| | |||| ||| || Sbjct 443492 CAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTTTGTA 443551 Query 16744 CATTTTCCAAATATCATTGTATT 16766 ||||| ||| || || | |||| Sbjct 443552 CATTTGCCAGATGTCGTGATATT 443574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414329680520