Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 5e-19
seq4 91.5 1e-13
seq3 84.2 2e-11
>seq2
Length=2687137
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || || || |||| |||||||| |||||||| || ||||| ||||| | |
Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| |||| |||| || || || ||| |||| | | || ||||| ||
Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| ||||| || || | | ||| || || || ||| |
Sbjct 1170014 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACT 1170073
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|||| |||||||||||| |||||||| || ||||| || || ||||||||
Sbjct 1170074 TCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 1170123
>seq4
Length=1577441
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 20961 CTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCG 21020
|| || |||| || | |||||| |||||||||||||||||||| | || ||| | ||
Sbjct 1239947 CTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCG 1240006
Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080
|| |||| || || || ||| | || | | ||||| || || | |||||||||
Sbjct 1240007 TCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTG 1240066
Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140
|| ||||| || || | | | | || || | |||| || | ||||||
Sbjct 1240067 TCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATA 1240126
Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||||||||| || ||||| || ||||||||
Sbjct 1240127 GTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 20961 CTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCG 21020
|| || |||| || | |||||| |||||||||||||||||||| | || ||| | ||
Sbjct 1240175 CTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCG 1240234
Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080
|| |||| || || || ||| | || | | ||||| || || | |||||||||
Sbjct 1240235 TCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTG 1240294
Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140
|| ||||| || || | | | | || || | |||| || | ||||||
Sbjct 1240295 TCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATA 1240354
Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||||||||| || ||||| || ||||||||
Sbjct 1240355 GTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037
|||||| |||||||||||||||||||| | || ||| | |||| |||| || || ||
Sbjct 1239736 AGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACC 1239795
Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097
||| | || | | ||||| || || | ||||||||||| ||||| ||
Sbjct 1239796 TGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTAGACTT 1239855
Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
|| | | | | || || | |||| || | |||||| |||||||||||||| ||
Sbjct 1239856 GACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGTCTTGCCGGTTAAGGT 1239915
Query 21158 TTTGACAAATATTTGCAT 21175
||||| || ||||||||
Sbjct 1239916 CTTGACGAAGATTTGCAT 1239933
>seq3
Length=1828518
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| || || || |||| ||||| || ||||||||||| ||||| ||||| | |
Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| | ||||||| || || || ||| | || || | ||| ||||| ||
Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | | | ||| || | ||||
Sbjct 868842 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 868783
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|||| ||| || ||||| ||||| | || || || || ||||||||||||
Sbjct 868782 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 868732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259143390876
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