Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq2 84.2 2e-11 >seq4 Length=1577441 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || || || ||||| || |||||| ||| ||| | || Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| || ||| || || |||||| | || ||||| Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || ||||||||||| || |||| | | || || || Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| ||||||||| |||| | ||||| |||| || Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || || || ||||| || |||||| ||| ||| | || Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| || ||| || || |||||| | || ||||| Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || ||||||||||| || |||| | | || || || Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| ||||||||| |||| | ||||| |||| || Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || || || ||||| || |||||| ||| ||| | || Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| || ||| || || |||||| | || ||||| Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || ||||||||||| || |||| | | || || || Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 |||||||||||||| ||||||||| | || ||| |||| Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATT 1239716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || ||||| ||| | | |||||||| || || ||||||||| Sbjct 1240524 GACAAGGAAGGTATTCCTCCTGATCAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAA 1240465 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || |||| | | || || || |||||||||||||| ||||||||| |||| | Sbjct 1240464 GACGGCAGAACTCTTTCTGACTATAACATTCAAAAGGAATCCACTCTTCACTTGGTCCTG 1240405 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 1240404 AGATTAAGAGGTGG 1240391 >seq2 Length=2687137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || ||| |||| || || || || || ||||||||| ||| || | Sbjct 1170124 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTC 1170065 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || || | | | | ||||| || ||| || || ||||| | || || Sbjct 1170064 CTCCGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 1170005 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||| | | || ||||| || || ||||||||||| | |||| || |||| || Sbjct 1170004 CCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTA 1169945 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || || ||||| |||||| | ||| |||| | |||| |||| || Sbjct 1169944 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796744927554