Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 2e-18
seq2 84.2 2e-11
>seq4
Length=1577441
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| |||| || || || ||||| || |||||| ||| ||| | ||
Sbjct 1240161 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240102
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | ||||| || ||| || || |||||| | || |||||
Sbjct 1240101 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240042
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | |||||||| || || ||||||||||| || |||| | | || || ||
Sbjct 1240041 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239982
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||||||||||||| ||||||||| |||| | ||||| |||| ||
Sbjct 1239981 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1239935
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| |||| || || || ||||| || |||||| ||| ||| | ||
Sbjct 1240389 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1240330
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | ||||| || ||| || || |||||| | || |||||
Sbjct 1240329 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1240270
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | |||||||| || || ||||||||||| || |||| | | || || ||
Sbjct 1240269 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1240210
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||||||||||||| ||||||||| |||| | ||||| |||| ||
Sbjct 1240209 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTGAGATTAAGAGGTGG 1240163
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| |||| || || || ||||| || |||||| ||| ||| | ||
Sbjct 1239933 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACTATTACCCTCGAGGTGGAGTCATCA 1239874
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | ||||| || ||| || || |||||| | || |||||
Sbjct 1239873 GACACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 1239814
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||| | | |||||||| || || ||||||||||| || |||| | | || || ||
Sbjct 1239813 CAACGTTTAATCTTTGCAGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTATAAC 1239754
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252
|||||||||||||| ||||||||| | || ||| ||||
Sbjct 1239753 ATTCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATT 1239716
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| || |||||| | || ||||| ||| | | |||||||| || || |||||||||
Sbjct 1240524 GACAAGGAAGGTATTCCTCCTGATCAGCAACGTTTAATCTTTGCAGGTAAGCAATTGGAA 1240465
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
|| || |||| | | || || || |||||||||||||| ||||||||| |||| |
Sbjct 1240464 GACGGCAGAACTCTTTCTGACTATAACATTCAAAAGGAATCCACTCTTCACTTGGTCCTG 1240405
Query 25248 CGATTACGAGGAGG 25261
||||| |||| ||
Sbjct 1240404 AGATTAAGAGGTGG 1240391
>seq2
Length=2687137
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090
||||||||| || ||| |||| || || || || || ||||||||| ||| || |
Sbjct 1170124 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTC 1170065
Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150
| | || || | | | | ||||| || ||| || || ||||| | || ||
Sbjct 1170064 CTCCGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 1170005
Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210
|||||| | | || ||||| || || ||||||||||| | |||| || |||| ||
Sbjct 1170004 CCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACTA 1169945
Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
||| || || ||||| |||||| | ||| |||| | |||| |||| ||
Sbjct 1169944 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410796744927554
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |