Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq3 82.4 8e-11 >seq2 Length=2687137 Score = 176 bits (194), Expect = 5e-39 Identities = 407/608 (67%), Gaps = 13/608 (2%) Strand=Plus/Minus Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659 || || ||||| | ||||| | |||| | ||||| |||| ||||||||| ||||| Sbjct 443599 CGTCGTTTCGTTCTCTTCCCTTTGAAATATCACGACATCTGGCAAATGTACAAACAGGCC 443540 Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719 || || || || ||||| | |||||| | ||| || ||||| | |||||| | Sbjct 443539 GAAGCTTCCTTTTGGACTGCCGAGGAAATAGACTTGGGAAAGGATTTGCATGACTGGAAT 443480 Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776 || |||||||||| ||| |||| ||| || || |||||||| || ||| Sbjct 443479 AATCGTATGAACGACAATGAGAAGTATTTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCC 443420 Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTCAGGAGGTGCAGGTGGC 116835 || || || ||||| || ||| |||| || ||| || | | |||| || | | Sbjct 443419 TCTGATGGTATTGTCAATGAAAATTTGGTGGAAAACTTCAGCGCTG-AGGTTCAACTTCC 443361 Query 116836 CGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| || || || ||||| ||||| ||| ||||||||| | ||||| |||| || Sbjct 443360 CGAAGCAAAATGTTTTTACGGTTTTCAAATCATGATGGAGAACATCCACTCCGAAACTTA 443301 Query 116896 TTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT----TTGTTGA 116951 || | || || || ||| | | | | |||| |||| ||||| | Sbjct 443300 CTCATTGTTGATTGATACTTACATCAAAGATCCAAA--AGAA--TCCGAATTCTTGTTCA 443245 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 | ||||||||||| || || || ||||||| ||||| || ||||| || | ||||| | Sbjct 443244 ATGCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTG 443185 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 ||| || || |||| || || |||| |||||||| || || || || ||| Sbjct 443184 CCGATGACGATGCTTTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCT 443125 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 ||||||||||| |||||| | || || ||| | || || | || || ||||| || Sbjct 443124 TCTTTTCGGGCTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTT 443065 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 |||| ||| ||| ||||| || | ||| || || || | || ||||||||| || | Sbjct 443064 TGACCTTCTCCAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGCTTGCT 443005 Query 117192 TGCTGTTC 117199 |||| ||| Sbjct 443004 TGCTATTC 442997 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || || | || || || ||||| ||| | || ||||| | Sbjct 1170124 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTC 1170065 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | | | |||| ||||| || |||| ||||| || || || || | | Sbjct 1170064 CTCCGACACCATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTG 1170006 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||||| | || | || || || || |||| |||| | || || ||||| Sbjct 1170005 ACCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACT 1169946 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||||| | || |||| || || || | ||||| || || Sbjct 1169945 ACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894 >seq3 Length=1828518 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| |||||||| || || || || || || |||||| | || || || | Sbjct 868733 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 868792 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| || |||| ||||| || |||| ||||| ||||| || || | || Sbjct 868793 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 868851 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| || || || || |||| || | | || | ||||| Sbjct 868852 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 868911 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| |||||| | || |||| Sbjct 868912 CAACATCCAAAAGGAGTCTACCTTGCA 868938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219129157360