Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 5e-39
seq3 82.4 8e-11
>seq2
Length=2687137
Score = 176 bits (194), Expect = 5e-39
Identities = 407/608 (67%), Gaps = 13/608 (2%)
Strand=Plus/Minus
Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659
|| || ||||| | ||||| | |||| | ||||| |||| ||||||||| |||||
Sbjct 443599 CGTCGTTTCGTTCTCTTCCCTTTGAAATATCACGACATCTGGCAAATGTACAAACAGGCC 443540
Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719
|| || || || ||||| | |||||| | ||| || ||||| | |||||| |
Sbjct 443539 GAAGCTTCCTTTTGGACTGCCGAGGAAATAGACTTGGGAAAGGATTTGCATGACTGGAAT 443480
Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776
|| |||||||||| ||| |||| ||| || || |||||||| || |||
Sbjct 443479 AATCGTATGAACGACAATGAGAAGTATTTTATCTCTAGAGTTCTTGCCTTTTTTGCTGCC 443420
Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTCAGGAGGTGCAGGTGGC 116835
|| || || ||||| || ||| |||| || ||| || | | |||| || | |
Sbjct 443419 TCTGATGGTATTGTCAATGAAAATTTGGTGGAAAACTTCAGCGCTG-AGGTTCAACTTCC 443361
Query 116836 CGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895
||| || || || ||||| ||||| ||| ||||||||| | ||||| |||| ||
Sbjct 443360 CGAAGCAAAATGTTTTTACGGTTTTCAAATCATGATGGAGAACATCCACTCCGAAACTTA 443301
Query 116896 TTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT----TTGTTGA 116951
|| | || || || ||| | | | | |||| |||| ||||| |
Sbjct 443300 CTCATTGTTGATTGATACTTACATCAAAGATCCAAA--AGAA--TCCGAATTCTTGTTCA 443245
Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011
| ||||||||||| || || || ||||||| ||||| || ||||| || | ||||| |
Sbjct 443244 ATGCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTG 443185
Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071
||| || || |||| || || |||| |||||||| || || || || |||
Sbjct 443184 CCGATGACGATGCTTTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAAGGTATCT 443125
Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131
||||||||||| |||||| | || || ||| | || || | || || ||||| ||
Sbjct 443124 TCTTTTCGGGCTCTTTCGCTTCTATCTTCTGGTTGAAAAAGAGAGGTCTTATGCCAGGTT 443065
Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191
|||| ||| ||| ||||| || | ||| || || || | || ||||||||| || |
Sbjct 443064 TGACCTTCTCCAATGAGCTTATTTGCAGAGATGAAGGATTACACACCGACTTTGCTTGCT 443005
Query 117192 TGCTGTTC 117199
|||| |||
Sbjct 443004 TGCTATTC 442997
Score = 100 bits (110), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||||||||| || ||||| || || | || || || ||||| ||| | || ||||| |
Sbjct 1170124 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTC 1170065
Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
| |||||| | | | |||| ||||| || |||| ||||| || || || || | |
Sbjct 1170064 CTCCGACACCATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTG 1170006
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
|||| ||||| | || | || || || || |||| |||| | || || |||||
Sbjct 1170005 ACCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTGTCCGACT 1169946
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||||||| | || |||| || || || | ||||| || ||
Sbjct 1169945 ACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 1169894
>seq3
Length=1828518
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| |||||||| || || || || || || |||||| | || || || |
Sbjct 868733 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 868792
Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| || |||| ||||| || |||| ||||| ||||| || || | ||
Sbjct 868793 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 868851
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| || || || |||| || || || || |||| || | | || | |||||
Sbjct 868852 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 868911
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892
||||||||| |||||| | || ||||
Sbjct 868912 CAACATCCAAAAGGAGTCTACCTTGCA 868938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219129157360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |