Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 6e-18
seq2 93.3 4e-14
seq4 89.7 4e-13
>seq3
Length=1828518
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580
||||| | |||||||| | |||||||| ||||| |||||||| || || ||| |
Sbjct 868953 AATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTA 868894
Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640
|||||| | || || ||||| |||| |||||||| || || ||||| || ||||||
Sbjct 868893 CCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCC 868834
Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700
||||| ||| || || || | || | ||||| | ||| ||||| | |||
Sbjct 868833 TTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTG 868774
Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || || ||||| || || ||||| ||||| |||||
Sbjct 868773 ATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 868736
>seq2
Length=2687137
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || | ||||||| |||| ||| | |||||||| || || |||||||| |||
Sbjct 1169892 TACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGG 1169951
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| ||| | || || | || || ||||| | || | ||| || || || ||||
Sbjct 1169952 ACAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAG 1170011
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || ||||||||| ||| || || || | |||| |||||| | | |||||
Sbjct 1170012 GAATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 1170071
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | ||| | || || ||||| | || || || |||||||||||
Sbjct 1170072 CTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 1170120
>seq4
Length=1577441
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || | |||||||| |||||||| | || || || ||||||||||| || ||
Sbjct 1240389 TACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAG 1240448
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| | || || | || || || || |||| | ||| |||||||| ||||
Sbjct 1240449 AAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAG 1240508
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || |||||||| ||| || || || | || | |||||| | ||| |
Sbjct 1240509 GAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCA 1240568
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || || || || || ||||| ||||||||||||||
Sbjct 1240569 CCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCAT 1240617
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || | |||||||| |||||||| | || || || ||||||||||| || ||
Sbjct 1239933 TACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAG 1239992
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| | || || | || || || || |||| | ||| |||||||| ||||
Sbjct 1239993 AAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAG 1240052
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || |||||||| ||| || || || | || | |||||| | ||| |
Sbjct 1240053 GAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCA 1240112
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| ||| | || |||||||| | || || || || || |||||
Sbjct 1240113 CCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || | |||||||| |||||||| | || || || ||||||||||| || ||
Sbjct 1240161 TACCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAG 1240220
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| | || || | || || || || |||| | ||| |||||||| ||||
Sbjct 1240221 AAAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAG 1240280
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || |||||||| ||| || || || | || | |||||| | ||| |
Sbjct 1240281 GAATACCTTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCA 1240340
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| ||| | || |||||||| | || || || || || |||||
Sbjct 1240341 CCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830341839612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |