Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
seq4 87.8 2e-12
>seq3
Length=1828518
Score = 107 bits (118), Expect = 2e-18
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| || | | ||||| ||||| || ||||||||| || ||||| |||| |
Sbjct 868962 CCACCTCTCAATCTAAGGACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 868903
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| ||| | | || || | ||||||||||| || || || ||||| ||||| | ||
Sbjct 868902 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 868843
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134
| | |||||||||| ||| | || | |||| ||| | | | |||||| || ||||
Sbjct 868842 ATTCCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCA 868785
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| || | ||||| || || || || || |||||||| || |||||||||||
Sbjct 868784 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 868733
>seq4
Length=1577441
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||||||| | || ||||| || | ||| ||||||||||| || || ||||
Sbjct 1239935 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1239994
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| | |||| || | |||||||| || || || | || ||||| || | ||
Sbjct 1239995 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240054
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134
| | ||||||||| ||| | || | |||| ||| | | | ||||| || ||||
Sbjct 1240055 ATACCTTCCTTGTCC-TGAATCTTAGACTTGA-CGTTGTCAATGGTGTCTGATGACTCCA 1240112
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| |||| || || || ||||| |||| ||||| || |||||||||||
Sbjct 1240113 CCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240161
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||||||| | || ||||| || | ||| ||||||||||| || || ||||
Sbjct 1240163 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240222
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| | |||| || | |||||||| || || || | || ||||| || | ||
Sbjct 1240223 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240282
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134
| | ||||||||| ||| | || | |||| ||| | | | ||||| || ||||
Sbjct 1240283 ATACCTTCCTTGTCC-TGAATCTTAGACTTGA-CGTTGTCAATGGTGTCTGATGACTCCA 1240340
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| |||| || || || ||||| |||| ||||| || |||||||||||
Sbjct 1240341 CCTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 1240389
Score = 86.0 bits (94), Expect = 7e-12
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||||||| | || ||||| || | ||| ||||||||||| || || ||||
Sbjct 1240391 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240450
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| | |||| || | |||||||| || || || | || ||||| || | ||
Sbjct 1240451 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240510
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134
| | ||||||||| ||| | || | |||| ||| | | | ||||| || ||||
Sbjct 1240511 ATACCTTCCTTGTCC-TGAATCTTAGACTTGA-CGTTGTCAATGGTGTCTGATGACTCCA 1240568
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187
| || | ||||| || || || ||||| || || ||||| || |||||||||
Sbjct 1240569 CCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCATTTTT 1240621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817521375080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |