Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-16 seq2 98.7 1e-15 >seq4 Length=1577441 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || | |||||| || || || | ||| ||||| ||| || || ||||| || || Sbjct 1239707 CCACCCCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 1239765 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| || || ||||| || || ||||| || || | ||||||||| ||||| Sbjct 1239766 AAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGG 1239825 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || || || Sbjct 1239826 AATACCTTCCTTGTCCTG 1239843 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || | ||| ||||| ||| || || ||||| || || Sbjct 1239935 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 1239993 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| || || ||||| || || ||||| || || | ||||||||| ||||| Sbjct 1239994 AAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGG 1240053 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || || || Sbjct 1240054 AATACCTTCCTTGTCCTG 1240071 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || | ||| ||||| ||| || || ||||| || || Sbjct 1240163 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 1240221 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| || || ||||| || || ||||| || || | ||||||||| ||||| Sbjct 1240222 AAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGG 1240281 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || || || Sbjct 1240282 AATACCTTCCTTGTCCTG 1240299 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || | ||| ||||| ||| || || ||||| || || Sbjct 1240391 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 1240449 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| || || ||||| || || ||||| || || | ||||||||| ||||| Sbjct 1240450 AAGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGG 1240509 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || || || Sbjct 1240510 AATACCTTCCTTGTCCTG 1240527 >seq2 Length=2687137 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | |||| || |||||||| || || || || || || || Sbjct 1169894 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 1169953 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || ||||| || |||||||||||||| | ||| || || |||||| Sbjct 1169954 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 1170013 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 1170014 ATTCCTTCCTTGTCTTG 1170030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526297765120