Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 214 2e-50 >seq2 Length=2687137 Score = 214 bits (236), Expect = 2e-50 Identities = 569/860 (66%), Gaps = 21/860 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||| |||||||||||| ||||| || || || || | || ||||| || Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775 Query 16004 TCCATAAAATCAAAAGGATTTTT-----TGAACAATAGTATTTATCGCATCCCAATTCCA 16058 ||||| |||||||| ||||| | || ||| | | ||| | || ||| | | Sbjct 442776 TCCATGAAATCAAATGGATTGGTGACGTTGTACACT--TTTTTGTTGC---CCAGAGCTA 442830 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 || || |||||| || || || || | |||||| ||| || ||||||||||| | Sbjct 442831 CCAGTAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCA 442890 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 || |||||| | || ||||| || | ||||||| || | || || || | | Sbjct 442891 GCAAGGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAA 442950 Query 16179 TTATATCTCTTACTACACTATT-TAACGGAGGGTTTAAT--AAGTGTTTAAACATTATAC 16235 | || | || | || | | | || | | | | ||||| || | | | Sbjct 442951 TAATCT---TTTCAACGATTTCCTCACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGC 443007 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 ||||||| || || |||||||| || || | || | ||| || || || || | || Sbjct 443008 AAGCAAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAAC 443067 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 ||||||| || |||| ||||| | ||| || |||| || || || || |||||||| | Sbjct 443068 CTGGCATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGA 443127 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 |||||||||| || || || |||||||| || ||| || || || | | | | Sbjct 443128 TACCTTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAA 443187 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 ||||| | | ||||| | || |||| ||| | ||| ||| |||| || ||||| | Sbjct 443188 TCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGA 443247 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | || | | |||||| |||| || |||||||| || | || || ||| Sbjct 443248 ACAAGAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTT 443307 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || || || |||||||| || |||||||| ||||| ||| | ||||||| | || Sbjct 443308 CGGAGTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTT 443367 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 | || |||| | || |||| | || ||||| || || || ||||| || |||| Sbjct 443368 GAACCTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAA 443427 Query 16656 AAAACGCAAGTATGTGTTTA-ATAAAAtttttttCGTTATC--TGA-AAGTTTTAACCAG 16711 |||| ||||| | | | | ||||||| || || || || | | | | || |||| Sbjct 443428 AAAAGGCAAG-AACTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTATTCCAG 443486 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 ||| ||||| ||| || || | || || |||||||||| ||||| | |||| | Sbjct 443487 TCATGCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGT 443546 Query 16772 TTATACATTTTCCATATGTC 16791 || ||||||| ||| ||||| Sbjct 443547 TTGTACATTTGCCAGATGTC 443566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511936404600