Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 311 1e-79 seq2 224 1e-53 >seq1 Length=3325186 Score = 311 bits (344), Expect = 1e-79 Identities = 1327/2086 (64%), Gaps = 63/2086 (3%) Strand=Plus/Minus Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 ||||||| | ||| || ||||||| ||| | || | || ||||| || |||||||| | Sbjct 2237111 CCTTGTCAACTGTAAACTGAATGGCAGCAGCGGCAGCTTGAGTACGCAGGTAGTACATAC 2237052 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || |||| || |||| || || || ||||| || || | ||| | | | Sbjct 2237051 CAGTCTTTAATCCTTTCTTCCAACCATAGAAGTGCATGCTGGTCAATTTACCCATAGTTG 2236992 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 || | || || |||| || ||| ||| ||||| ||||| ||||| |||| Sbjct 2236991 GAGACATCAGGTGAATGTTCAACGACTGAGATTGGTCGATATAGGCTGATCTGTCCGCAG 2236932 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | ||||| |||||||| | || ||||||| || ||||||| | || | | Sbjct 2236931 CCATATCAATGATAGTCTTTTGAGATATCTCCCAAACTGTCTTATAAAGGCCTTTGAGTT 2236872 Query 62275 CTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 || |||| ||| | ||| |||||||| || ||| || || ||| || | Sbjct 2236871 GCTCAGGAATGTTGGGCAAATTTTGAATGGAGCCGTTGTCTGAAATGATATGATTTTTCA 2236812 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | | ||| | ||| | || || | | | | | | || ||||| | || Sbjct 2236811 TGTTATCGTCCCAAAGACCCAAATCCACTAGATCACGCAATAAGTAAGGATTAACAATTT 2236752 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 |||||||||||| ||||| | || | ||| || ||| ||||| ||||| | ||| Sbjct 2236751 GGAATTCTCCAGCTAATACACGACGTGAGTAGATGTTAGAAGTATAAGGTTCGAAACACT 2236692 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA- 62510 | || | |||||||| || | |||||| ||||| ||||||||||| || | || | | Sbjct 2236691 CGTTGTAACCCAAAATCTGGGAAGTTGAAGCAGTAGGCATAGGTGCAACTAG-AAGCGAG 2236633 Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 ||||||||||| | | || || |||| || ||||| | ||| || || || Sbjct 2236632 TTTCTAAGACCTGTCGAAATAATCTTGGCTTTGAGTGACTCCCATTCCCACAGCTCAGAG 2236573 Query 62571 GG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCC 62623 || | | ||| ||| || | |||||| | | || || || Sbjct 2236572 GGCTTTTTGTCCCACAAATC-------ATACTGCAAAATACCCTGAGATGCTGGAGAACC 2236520 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | | | || || || | |||||||| | |||| || | || || || || || Sbjct 2236519 TTGAAAGGTTTCGTAAGCTCCTTCCTCAACGGCTAATTCGCTCGAGGCTTCCAAGGCTCC 2236460 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG 62743 | || || ||||| || |||| |||| || | | || || || ||||||||| Sbjct 2236459 ATGGTAGATAGTTTCGAAAATCTGGATATTAAGTTGCTTAGCCTCTGGAGAATCAAATGG 2236400 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | || || || || || ||||| ||||||||||||| | | || ||||||| Sbjct 2236399 GATTCTCAACTTCATGAAAGCATCAGCTAAACCTTGAACACCAACAGCAATTGGTCTATT 2236340 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | | | || || | ||| ||||||| || || || || | || |||||| | || Sbjct 2236339 ACGCATGTTGGATCTCCTAGCCTCTGGAACCGGGTAGTAGTTTCTGTCGATAATTCTGTT 2236280 Query 62864 GAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC- 62919 | || | |||| | ||| | | || | ||| || ||| | | | | Sbjct 2236279 CAAGTTACGAGTGACCAC--CTTCGTG-ATGTCATGCAGCTTTTCAAAGTTGTACCAACA 2236223 Query 62920 --------CATCTATTACAAACATG--TTCAAT-GCAACAGATGCCAGATTACACACGGC 62968 |||| || ||| | | | || |||| ||| |||| ||||| || || Sbjct 2236222 GTGAGTATCATCGGTTTCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGC 2236163 Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 || | | | ||| | | |||||| ||||| ||| | || || Sbjct 2236162 AGTTTCTTCTGGGGAAGAATACTCAACAATCTCACAACAAAGGTTAGAGGATTTAATGAC 2236103 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 || || || | || || | || |||||||| ||||||||||| | ||||||||||| Sbjct 2236102 ACCCAAGTTCTTCTGGTTGGTTTTCTTGTTACAAGCATCCTTATACAACATGAATGGAGT 2236043 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63148 ||| ||||| |||| | || | || || | ||| | | | || || || | Sbjct 2236042 ACCGGTTTCTGTCTGTGCCTCGAGGATGGCGTACCAAAGCTTTTGGGCTTTGAT----GG 2235987 Query 63149 TTTGTATCTC----CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCC 63204 ||||| | | | ||| |||||||| |||| | ||| || || || || Sbjct 2235986 TTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTACAGTTCTTCAAATTCATCGCCGT 2235927 Query 63205 AAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63264 | || | | | | | |||| ||| ||| | | || | ||| || || | | | Sbjct 2235926 AGACGTCGGCAAGGCCAGGAGCCTCACTTGGAGAGAACAGGGTCCATTCGCCATTCTGTT 2235867 Query 63265 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTAT 63324 || | |||||| || |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 2235866 CGACCCTTTTCATGAACAGATCAGGGATCCATAGAGCCGGGAATAGATCTCTGGCTCTGA 2235807 Query 63325 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63384 |||||| ||||| ||||| || || | || || | || || | |||||| | Sbjct 2235806 TTTCCTCTTTTCCATGGTTCTTACGAATGTCAATAAAGGCGAAGATGTCCGCATGCCATG 2235747 Query 63385 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63444 |||||||||| | || | | ||||| || ||||| || || ||||| | || | || Sbjct 2235746 GTTCCAAGTACAAAGCAAATGCACCAGGGCGCTTGTTACCACCTTGATCAACATAACGAG 2235687 Query 63445 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 ||||||| || ||||||||| |||||||||||||||||| || |||| || ||||| | Sbjct 2235686 CGGTGTTGTTGAAAACTCTCACCATTGGAATAATACCGTTCGAAGTACCGTTAGTACCAG 2235627 Query 63505 AGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63564 || ||| ||| |||||||||||||| ||| | ||| ||||| || || ||| Sbjct 2235626 CAATGTAGGATCCTGTGGCACGAATATTATGAATGTGCAAACCAATTCCACCAGCAGTTT 2235567 Query 63565 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA 63624 | || ||||| || ||| || || || ||||| || ||||| || ||||| || Sbjct 2235566 TGGAAATTAAAGCACATTCCTTCAAAGTATCATAAATACCTTCAATCGAGTCATCCCGCA 2235507 Query 63625 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAG 63684 || || || ||||| |||||||| | ||| || || || ||||| | |||| Sbjct 2235506 TGGCAACTAAGAAACATGACGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAG 2235447 Query 63685 GAGAAGCGTGCGTAAACCATTT----TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63740 |||| ||||| || || | || ||| |||| ||||| || |||||| | Sbjct 2235446 GAGAGGCGTGAGTGAAATACTTCTGACTCATAAAG----TTGTAGGTTTCAATAACCCTT 2235391 Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 | || || |||||| || | ||||||||||| | | ||| ||||| | ||| Sbjct 2235390 GCAATGTCATCACCATGAATACCGATAGCGACACGCATAATTAAGTGTTGAGGACGTTCT 2235331 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 ||| ||| || ||| ||| | ||| ||| ||||||| || || || ||||| || Sbjct 2235330 GCAACATTGCCATTAATTCTCAGAAGGTAAGATCTTTCCAAGGTCTTGAATCCAAAGTAA 2235271 Query 63861 TTGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTT 63919 || || |||||| |||| ||||| | |||| | || || |||| ||| | ||| | Sbjct 2235270 TTATACTGAAAA-TCTCTATCGTAGACAATAGCAGAGTTCAGCTCATCAGCGTGTTTCTG 2235212 Query 63920 AACTATATCCATGGTAA---TACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 63975 ||| || | |||| | || |||| | ||||| || ||||| || || || | Sbjct 2235211 AACAAT----GTTGTAAGTGTCCTCAGAAACTAAAGGAGAGTGCTTCCCGTTCTTTGGGT 2235156 Query 63976 TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 64035 | | || | | || || | |||| | | || | || | || | ||||||| Sbjct 2235155 TGATGTATTCATACAACTCTTTGGTCACCTGAGAGTATTGCTTAGTAGTCTGTTTGTGTA 2235096 Query 64036 GATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 ||| || | || ||||| || || | |||||||||||| ||||| Sbjct 2235095 AATTGGAAACAGCAATTCTTGCTGCCAAAATGGCATAATCGGGATG 2235050 >seq2 Length=2687137 Score = 224 bits (248), Expect = 1e-53 Identities = 583/881 (66%), Gaps = 12/881 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| || | |||||||| || || || || || |||| || || || Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||||||||| |||||||| || ||||| | |||||| |||| | | Sbjct 442776 TCCATGAAATCAAATGGATTGGTGACGTTGTACACTTTTTTGTTGCCCAGAGCTACCAGT 442835 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | |||||| || ||||| || | ||| ||||| || |||||||| | | Sbjct 442836 AGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGCAAG 442895 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||| |||||||| | || | || || |||||| || || | ||| ||||| Sbjct 442896 GAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTCTGTAATAATC 442955 Query 33531 AATCTAACGGTTTCTTCACTCGGTG-GATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | |||| |||| ||||| | | | ||| || || || | ||| || || || Sbjct 442956 TTTTCAACGATTTCCTCACTGGCTCTGTTGTTC-AAGTGAGAGAATAGCAAGCAAGCAAA 443014 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| ||| | || || ||||| | ||| | || || || || || | || ||||| Sbjct 443015 GTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCAT 443074 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || | |||||| | ||| || || |||||||| || || ||||||||||| ||||| Sbjct 443075 AAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACCTTC 443134 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTATCCA-CT 33765 || ||||| ||||||| | | || | | || ||||| ||||| || Sbjct 443135 AACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCATCT 443194 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 || ||||| || ||||| | ||| | ||| || || || || |||||||| || | Sbjct 443195 CATG-GCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAAGA 443253 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | | ||| || |||||| | |||||||| ||||| | || |||| || | Sbjct 443254 ATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGAGT 443313 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | ||||| || || || ||||| ||||| |||||| | || |||| || || || | Sbjct 443314 GGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAACCT 443373 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 | | | || ||| | ||||||||||| || || |||||| ||| |||||||| | Sbjct 443374 CAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAAGG 443433 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCAATCATTG 34061 | | || |||||||| || || | || ||| | |||||||| |||| Sbjct 443434 CAAGAACTCTAGAGATAAAATACTTCTCAT-TGTCGTTCATACGATTATTCCAGTCATGC 443492 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 | ||| || | || | ||| || | |||||||| || || || |||| ||| ||| Sbjct 443493 AAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTTTGTAC 443552 Query 34122 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || | ||||||||| ||||||| | ||||| | ||| || Sbjct 443553 ATTTGCCAGATGTCGTGATATTTCAAAGGGAAGAGAACGAA 443593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817513400080