Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4 122 9e-23
>seq4
Length=1577441
Score = 122 bits (134), Expect = 9e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612
||||||||||||| || || || |||||||||||||| || | || || ||||
Sbjct 1239722 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCT 1239781
Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672
|| | || ||||| ||| |||| | |||||||||||| ||||| || ||||| |||||
Sbjct 1239782 TCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC- 1239840
Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731
||| | || | || | | || | ||||| | | ||||||||| | ||| | ||
Sbjct 1239841 CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCGAGGGTAATAGT 1239900
Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||| || || || ||||| |||||||||
Sbjct 1239901 CTTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1239934
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||| | || || ||||||| || || || |||||||||||||| ||
Sbjct 1239935 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1239994
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || |||||| | || ||||| ||| |||| | |||||||||||| |||||
Sbjct 1239995 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240054
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | || | | || | ||||| | | ||||||
Sbjct 1240055 ATACCTTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCAC 1240113
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | ||| | ||||||||||| || || || ||||| |||||||||
Sbjct 1240114 CTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1240162
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||| | || || ||||||| || || || |||||||||||||| ||
Sbjct 1240163 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240222
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || |||||| | || ||||| ||| |||| | |||||||||||| |||||
Sbjct 1240223 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240282
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | || | | || | ||||| | | ||||||
Sbjct 1240283 ATACCTTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCAC 1240341
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | ||| | ||||||||||| || || || ||||| |||||||||
Sbjct 1240342 CTCGAGGGTAATAGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCATA 1240390
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||| | || || ||||||| || || || |||||||||||||| ||
Sbjct 1240391 CCACCTCTTAATCTCAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 1240450
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || |||||| | || ||||| ||| |||| | |||||||||||| |||||
Sbjct 1240451 AGAGTTCTGCCGTCTTCCAATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGA 1240510
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | || | | || | ||||| | | ||||||
Sbjct 1240511 ATACCTTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCAC 1240569
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || | ||||| || || | ||||| || || || |||||
Sbjct 1240570 CTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTCACAAAAATCTGCAT 1240617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063931791200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |