Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq2 221 1e-52
>seq2
Length=2687137
Score = 221 bits (244), Expect = 1e-52
Identities = 571/863 (66%), Gaps = 13/863 (2%)
Strand=Plus/Plus
Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428
||||| || ||| |||||| ||||| || ||||| || ||||| ||| || || ||
Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775
Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487
||||| ||||| |||||||| || ||| | ||||||| | || || ||| |
Sbjct 442776 TCCATGAAATCAAATGGATTGGT-GACGTTGTACACTTTTTTGTTGCCCAGAGCTACCAG 442834
Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547
|| ||||||||||| ||||||| ||| || |||| || || ||||| || | |
Sbjct 442835 TAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGCAA 442894
Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607
||||||| || || || || |||||| || |||||||| | ||||
Sbjct 442895 GGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTC---TGTAAT 442951
Query 13608 AATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13664
|||||| || || || | | | | || | || || | || || ||
Sbjct 442952 AATCTTTTCAACGATTTCCTCACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCAAGC 443011
Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724
||| || || | || |||||||| | |||||| || || || || || || |||||
Sbjct 443012 AAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGG 443071
Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784
||| | |||| ||||| ||||| || || | |||||| || || |||||||| || ||
Sbjct 443072 CATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACC 443131
Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844
||||| ||||| || || | | ||||| | ||| | || | | | | |||||
Sbjct 443132 TTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCA 443191
Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904
| | | ||||| |||| |||| ||| ||| | || || ||||| |||||||| ||
Sbjct 443192 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAA 443251
Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964
||| ||||| | | | ||||| |||||||| | || || |||| ||
Sbjct 443252 GAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGA 443311
Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024
||| ||||| || || || |||||||| ||||||||| | ||||| | ||| ||
Sbjct 443312 GTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAAC 443371
Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084
||| | | || |||| |||| |||||||| |||||||||||| || ||||||||
Sbjct 443372 CTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAA 443431
Query 14085 TGCCAATATGTTTTTA-ATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGG 14140
| ||| | | | | ||||| || | ||| | | ||| | | || ||||| ||
Sbjct 443432 -GGCAAGAACTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTATTCCAGTCAT 443490
Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200
|||||||| | |||| ||| || | |||||||| ||| | || | ||| |
Sbjct 443491 GCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTTTGT 443550
Query 14201 ACATTACCCATATTTCTTTATAT 14223
||||| ||| || || | ||||
Sbjct 443551 ACATTTGCCAGATGTCGTGATAT 443573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588734194040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |