Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12] 11 sequences; 9,597,535 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=2687137 Score = 221 bits (244), Expect = 1e-52 Identities = 571/863 (66%), Gaps = 13/863 (2%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| || ||| |||||| ||||| || ||||| || ||||| ||| || || || Sbjct 442716 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTC 442775 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||||| |||||||| || ||| | ||||||| | || || ||| | Sbjct 442776 TCCATGAAATCAAATGGATTGGT-GACGTTGTACACTTTTTTGTTGCCCAGAGCTACCAG 442834 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 || ||||||||||| ||||||| ||| || |||| || || ||||| || | | Sbjct 442835 TAGTCTATCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATTCCCAGCAA 442894 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||||||| || || || || |||||| || |||||||| | |||| Sbjct 442895 GGAAACAGGAAGAGCATCTGTGAAGTATCTTTTTTCAATCTCGACAGCCTC---TGTAAT 442951 Query 13608 AATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13664 |||||| || || || | | | | || | || || | || || || Sbjct 442952 AATCTTTTCAACGATTTCCTCACTGGCTCTGTTGTTCAAGTGAGAGAATAGCAAGCAAGC 443011 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||| || || | || |||||||| | |||||| || || || || || || ||||| Sbjct 443012 AAAGTCGGTGTGTAATCCTTCATCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGG 443071 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||| | |||| ||||| ||||| || || | |||||| || || |||||||| || || Sbjct 443072 CATAAGACCTCTCTTTTTCAACCAGAAGATAGAAGCGAAAGAGCCCGAAAAGAAGATACC 443131 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 ||||| ||||| || || | | ||||| | ||| | || | | | | ||||| Sbjct 443132 TTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAAAGCATCGTCATCGGCAATCCA 443191 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | | | ||||| |||| |||| ||| ||| | || || ||||| |||||||| || Sbjct 443192 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAA 443251 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 ||| ||||| | | | ||||| |||||||| | || || |||| || Sbjct 443252 GAATTCGGATTCTTTTGGATCTTTGATGTAAGTATCAATCAACAATGAGTAAGTTTCGGA 443311 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||| ||||| || || || |||||||| ||||||||| | ||||| | ||| || Sbjct 443312 GTGGATGTTCTCCATCATGATTTGAAAACCGTAAAAACATTTTGCTTCGGGAAGTTGAAC 443371 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 ||| | | || |||| |||| |||||||| |||||||||||| || |||||||| Sbjct 443372 CTCAGCGCTGAAGTTTTCCACCAAATTTTCATTGACAATACCATCAGAGGCAGCAAAAAA 443431 Query 14085 TGCCAATATGTTTTTA-ATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGG 14140 | ||| | | | | ||||| || | ||| | | ||| | | || ||||| || Sbjct 443432 -GGCAAGAACTCTAGAGATAAAATACTTCTCATTGTCGTTCATACGATTATTCCAGTCAT 443490 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 |||||||| | |||| ||| || | |||||||| ||| | || | ||| | Sbjct 443491 GCAAATCCTTTCCCAAGTCTATTTCCTCGGCAGTCCAAAAGGAAGCTTCGGCCTGTTTGT 443550 Query 14201 ACATTACCCATATTTCTTTATAT 14223 ||||| ||| || || | |||| Sbjct 443551 ACATTTGCCAGATGTCGTGATAT 443573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588734194040