Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F001708105.1_202016-08-12]
11 sequences; 9,597,535 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq4 91.5 1e-13
seq3 89.7 4e-13
seq2 82.4 6e-11
>seq4
Length=1577441
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/229 (70%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
||||| || | |||| |||||||| | || || || || | || | |||| |||
Sbjct 1240409 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTTCTGCCGTCTTCC 1240468
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
||||| || || ||||| || || || || ||||| | || | |||||| || || |||
Sbjct 1240469 AATTGCTTACCTGCAAAGATTAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTG 1240527
Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
| || ||||| || ||| ||||| | ||| || || | || ||||| ||
Sbjct 1240528 AATCTTAGACTTGACGTTGTCAATGGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTT 1240587
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATTTGTA 43128
|| ||||| |||||||||||||| |||||||| |||| || || |||
Sbjct 1240588 ACCTGTTAGGGTTTTCACAAAAATCTGCATTTT-TTAAGGTTCTTAGTA 1240635
>seq3
Length=1828518
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||||| || ||||| || | | || |||||||| || || |||||
Sbjct 868927 CTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAA 868868
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036
|||| |||||||| || | || | || || || || |||| || |||||
Sbjct 868867 GATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 868809
Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096
|| ||| |||||| || ||| || || | || ||||| || ||||| || || || |
Sbjct 868808 TGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTA 868749
Query 43097 CAAAAATTTGCATTTT 43112
| ||||||||||||||
Sbjct 868748 CGAAAATTTGCATTTT 868733
>seq2
Length=2687137
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
|||||| || | ||||| ||||||| || | |||| |||||||| || || |||||
Sbjct 1169929 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAA 1169988
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|||||| || ||||| || | || | ||||| || || ||| ||||| |
Sbjct 1169989 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACGTT 1170048
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
| | | |||||| | |||||| || | || || || || ||||||| || || ||
Sbjct 1170049 GTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCGGTTAAGGTCTTGAC 1170108
Query 43098 AAAAATTTGCATTTT 43112
||||| ||||||||
Sbjct 1170109 GAAAATCTGCATTTT 1170123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381369548872638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |